Evidence map›Paper›PMID 33958620›Full record

ArticleScientific reports2021

Osmotic stress-induced somatic embryo maturation of coffee Coffea arabica L., shoot and root apical meristems development and robustness.

Eliana Valencia-Lozano, Jorge E Ibarra, Humberto Herrera-Ubaldo, Stefan De Folter, José L Cabrera-Ponce

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 23 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Transcriptomic Analysis of Osmotic Stress-Tolerant Somatic Embryos ofInternational journal of molecular sciences · 2025
    Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Tissue-specific analysis ofSaudi journal of biological sciences · 2021
    Article
  10. Frontiers in plant science · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Eliana Valencia-LozanoDepartamento de Biotecnología y Bioquímica, Centro de Investigación y Estudios Avanzados del IPN (CINVESTAV), Unidad Irapuato, Km. 9.6 Libramiento Norte Carretera Irapuato-León, CP 36824, Irapuato, Guanajuato, Mexico.ORCID 0000-0001-5380-326X
Jorge E IbarraDepartamento de Biotecnología y Bioquímica, Centro de Investigación y Estudios Avanzados del IPN (CINVESTAV), Unidad Irapuato, Km. 9.6 Libramiento Norte Carretera Irapuato-León, CP 36824, Irapuato, Guanajuato, Mexico.ORCID 0000-0002-1013-8260
Humberto Herrera-UbaldoLangebio. Unidad de Genómica Avanzada (CINVESTAV, UGA-LANGEBIO), Km. 9.6 Libramiento Norte Carretera Irapuato-León, CP 36824, Irapuato, Guanajuato, Mexico.ORCID 0000-0002-5408-4022
Stefan De FolterLangebio. Unidad de Genómica Avanzada (CINVESTAV, UGA-LANGEBIO), Km. 9.6 Libramiento Norte Carretera Irapuato-León, CP 36824, Irapuato, Guanajuato, Mexico.ORCID 0000-0003-4363-7274
José L Cabrera-PonceDepartamento de Ingeniería Genética, Centro de Investigación y Estudios Avanzados del IPN (CINVESTAV), Unidad Irapuato, Km. 9.6 Libramiento Norte Carretera Irapuato-León, CP 36824, Irapuato, Guanajuato, Mexico. jlcabre@yahoo.com.mx.ORCID 0000-0002-6142-1963
Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional · MXInstituto Tecnológico Superior de Irapuato · MX

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Somatic embryogenesis (SE) is the most important plant biotechnology process for plant regeneration, propagation, genetic transformation and genome editing of coffee, Coffea arabica L. Somatic embryo (SEs) conversion to plantlets is the principal bottleneck for basic and applied use of this process. In this study we focus on the maturation of SEs of C. arabica var. Typica. SEs conversion to plantlet up to 95.9% was achieved under osmotic stress, using 9 g/L gelrite, as compared with only 39.34% in non-osmotic stress. Mature SEs induced in osmotic stress developed shoot and root apical meristems, while untreated SEs were unable to do it. C. arabica regenerated plants from osmotic stress were robust, with higher leaf and root area and internode length. To understand a possible regulatory mechanism, gene expression of key genes of C. arabica, homologous to sequences in the Arabidopsis thaliana genome, were analyzed. A set of two component system and cytokinin signaling-related coding genes (AHK1, AHK3, AHP4 and ARR1) which interact with WUSCHEL and WOX5 homedomains and morphogenic genes, BABY-BOOM, LEC1, FUS3 and AGL15, underwent significant changes during maturation of SEs of C. arabica var. Typica. This protocol is currently being applied in genetic transformation with high rate of success.

Indexed as

Osmotic PressureCoffeaMeristemPlant RootsPlant ShootsSeedsTranscriptome

Identifiers

PMID33958620
PMCPMC8102543
OpenAlexW3158404970

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.