Evidence map›Paper›PMID 33957980›Full record

ArticleGut pathogens2021

Comparison of a mycobacterial phage assay to detect viable Mycobacterium avium subspecies paratuberculosis with standard diagnostic modalities in cattle with naturally infected Johne disease.

Robert J Greenstein, Liya Su, Irene R Grant, Antonio C G Foddai, Amy Turner, Jason S Nagati, Sheldon T Brown, Judith R Stabel

Open access · goldAbstract read
In one paragraph

Article in Gut pathogens, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed, 2 pooled it
0.6field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 2 syntheses or guidelines pooled it, 4 citations in OpenAlex.

  1. Pooled it
  2. Cytokine expression in subjects withFrontiers in cellular and infection microbiology · 2024
    Pooled it
  3. Article
  4. The evidence forTranslational cancer research · 2023
    Review
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Robert J GreensteinDepartment of Surgery, James J. Peters Veterans Affairs Medical Center, Bronx, NY, USA. BGAxis@aol.com.ORCID http://orcid.org/0000-0002-1224-2192
Liya SuLaboratory of Molecular Surgical Research, James J. Peters Veterans Affairs Medical Center, Bronx, NY, USA.
Irene R GrantInstitute for Global Food Security, School of Biological Sciences, Queen's University Belfast, Belfast, UK.
Antonio C G FoddaiInstitute for Global Food Security, School of Biological Sciences, Queen's University Belfast, Belfast, UK.
Amy TurnerJohne's Disease Research Project USDA-ARS-NADC, Ames, IA, USA.
Jason S NagatiDepartment of Medicine, Columbia University Medical Center, New York, NY, USA.
Sheldon T BrownInfectious Disease Section, James J. Peters Veterans Affairs Medical Center, Bronx, NY, USA.
Judith R StabelJohne's Disease Research Project USDA-ARS-NADC, Ames, IA, USA.
James J. Peters VA Medical Center · USNational Animal Disease Center · USQueen's University Belfast · GBColumbia University Irving Medical Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundMycobacterium avium subspecies paratuberculosis (MAP), the cause of Johne disease, is a slow growing mycobacterium. Viable MAP detection is difficult, inconstant and time-consuming. The purpose of this study was to compare a rapid phage/qPCR assay performed on peripheral blood mononuclear cells (PBMCs) with three standard methods of MAP detection: fecal MAP PCR; plasma antigen-specific IFN-γ & serum MAP ELISA hypothesizing that, if sensitive and specific, Johne animals would be positive and Control animals negative. We studied a well characterized herd of Holstein cattle that were naturally infected with MAP and their Controls.

resultsWith phage/qPCR 72% (23/32) of Johne and 35% (6/17) of Controls were MAP positive. With fecal PCR 75% (24/32) of Johne and 0% (0/17) of Controls were MAP positive. With plasma antigen-specific IFN-γ 69% (22/32) of Johne and 12% (2/17) of Controls were MAP positive. With serum MAP ELISA, 31% (10/32) of Johne and 0% (0/17) of Controls were MAP positive. When phage / qPCR and fecal PCR results were combined, 100% (32/32) Johne and 35% (6/17) of Control animals were MAP positive. Younger Control animals (1-3 years) had significantly fewer plaques (25 ± 17 SEM) than older Controls (4-12 years) (309 ± 134 p = 0.04). The same trend was not observed in the Johne animals (p = 0.19).

conclusionsIn contrast to our hypothesis, using the phage/qPCR assay we find that viable circulating MAP can rapidly be detected from the blood of animals infected with, as well as those in the Control group evidently colonized by MAP. These data indicate that the presence of viable MAP in blood does not necessarily signify that an animal must of necessity be demonstrably ill or be MAP positive by standard diagnostic methods.

Indexed as

Crohn diseaseJohne diseaseMycobacteriophageMycobacterium avium subspecies paratuberculosis (MAP)Peripheral blood mononuclear cells (PBMCs)Phage assayQuantitative PCR

Identifiers

PMID33957980
PMCPMC8103604
OpenAlexW3159144500

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.