Evidence map›Paper›PMID 33955484›Full record

ArticleThe Plant cell2021

The entry reaction of the plant shikimate pathway is subjected to highly complex metabolite-mediated regulation.

Ryo Yokoyama, Marcos V V de Oliveira, Bailey Kleven, Hiroshi A Maeda

Open access · hybridAbstract read
In one paragraph

Article in The Plant cell, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 116 citations in OpenAlex.

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  16. Horticulture research · 2025
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  18. Exogenous Melatonin Application Enhances Pepper (Foods (Basel, Switzerland) · 2025
    Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Ryo YokoyamaDepartment of Botany, University of Wisconsin-Madison, 430 Lincoln Dr. Madison, WI 53706, USA.ORCID 0000-0001-5268-4094
Marcos V V de OliveiraDepartment of Botany, University of Wisconsin-Madison, 430 Lincoln Dr. Madison, WI 53706, USA.ORCID 0000-0002-9330-2782
Bailey KlevenDepartment of Botany, University of Wisconsin-Madison, 430 Lincoln Dr. Madison, WI 53706, USA.ORCID 0000-0001-8889-9310
Hiroshi A MaedaDepartment of Botany, University of Wisconsin-Madison, 430 Lincoln Dr. Madison, WI 53706, USA.ORCID 0000-0003-0246-694X
University of Wisconsin–Madison · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The plant shikimate pathway directs bulk carbon flow toward biosynthesis of aromatic amino acids (AAAs, i.e. tyrosine, phenylalanine, and tryptophan) and numerous aromatic phytochemicals. The microbial shikimate pathway is feedback inhibited by AAAs at the first enzyme, 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase (DHS). However, AAAs generally do not inhibit DHS activities from plant extracts and how plants regulate the shikimate pathway remains elusive. Here, we characterized recombinant Arabidopsis thaliana DHSs (AthDHSs) and found that tyrosine and tryptophan inhibit AthDHS2, but not AthDHS1 or AthDHS3. Mixing AthDHS2 with AthDHS1 or 3 attenuated its inhibition. The AAA and phenylpropanoid pathway intermediates chorismate and caffeate, respectively, strongly inhibited all AthDHSs, while the arogenate intermediate counteracted the AthDHS1 or 3 inhibition by chorismate. AAAs inhibited DHS activity in young seedlings, where AthDHS2 is highly expressed, but not in mature leaves, where AthDHS1 is predominantly expressed. Arabidopsis dhs1 and dhs3 knockout mutants were hypersensitive to tyrosine and tryptophan, respectively, while dhs2 was resistant to tyrosine-mediated growth inhibition. dhs1 and dhs3 also had reduced anthocyanin accumulation under high light stress. These findings reveal the highly complex regulation of the entry reaction of the plant shikimate pathway and lay the foundation for efforts to control the production of AAAs and diverse aromatic natural products in plants.

Indexed as

Amino Acids, DicarboxylicArabidopsisCyclohexenesPhenylalanineSeedlingsShikimic AcidTryptophanTyrosineAmino Acids, DicarboxylicCyclohexenesPhenylalaninepretyrosineShikimic AcidTryptophanTyrosine

Identifiers

PMID33955484
PMCPMC8136874
OpenAlexW3118580617

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.