Evidence map›Paper›PMID 33955055›Full record

ArticleYeast (Chichester, England)2021

Variation of the response to metal ions and nonsense-mediated mRNA decay across different Saccharomyces cerevisiae genetic backgrounds.

Angelo Wong, Ernest Moses Lam, Cheryl Pai, Annika Gunderson, Tamar E Carter, Bessie W Kebaara

Open access · greenAbstract read
In one paragraph

Article in Yeast (Chichester, England), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.2field-weighted citation impact, top 48% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Nonsense-mediated mRNA decay and metal ion homeostasis and detoxification in Saccharomyces cerevisiae.Biometals : an international journal on the role of metal ions in biology, biochemistry, and medicine · 2022
    Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Angelo WongDepartment of Biology, Baylor University, Waco, Texas, 76798, USA.
Ernest Moses LamDepartment of Biology, Baylor University, Waco, Texas, 76798, USA.
Cheryl PaiDepartment of Biology, Baylor University, Waco, Texas, 76798, USA.
Annika GundersonDepartment of Biology, Baylor University, Waco, Texas, 76798, USA.
Tamar E CarterDepartment of Biology, Baylor University, Waco, Texas, 76798, USA.
Bessie W KebaaraDepartment of Biology, Baylor University, Waco, Texas, 76798, USA.ORCID 0000-0001-6582-1764
Baylor University · US

Funding

Investigation of copper homeostasis mRNAs regulated by the Nonsense-mediated mRNA decay pathwayR15GM117524 · NIGMS · BAYLOR UNIVERSITY · PI KEBAARA, BESSIE W · 2016 to 2016
$413k
NIGMS NIH HHS R15 GM117524
6 · The paper itself

Abstract

Regulation of mRNA steady-state levels is important in controlling gene expression particularly in response to environmental stimuli. This allows cells to rapidly respond to environment changes. The highly conserved nonsense-mediated mRNA decay (NMD) pathway was initially identified as a pathway that degrades aberrant mRNAs. NMD is now recognized as a pathway with additional functions including precisely regulating the expression of select natural mRNAs. Majority of these natural mRNAs encode fully functional proteins. Regulation of natural mRNAs by NMD is activated by NMD targeting features and environmental cues. Here, we show that Saccharomyces cerevisiae strains from three genetic backgrounds respond differentially to NMD depending on the environmental stimuli. We found that wild type and NMD mutant W303a, BY4741, and RM11-1a yeast strains respond similarly to copper in the environment but respond differentially to toxic cadmium. Furthermore, the PCA1 alleles encoding different mRNAs from W303a and RM11-1a strains are regulated similarly by NMD in response to the bio-metal copper but differentially in response to toxic cadmium.

Indexed as

Saccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsGene Expression Regulation, FungalGenetic BackgroundIonsNonsense Mediated mRNA DecayIonsSaccharomyces cerevisiae Proteinscadmiumcoppermessenger RNA decaymetal ionsnonsense-mediated mRNA decayPCA1 mRNA

Identifiers

PMID33955055
PMCPMC8934196
OpenAlexW3158265260

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.