Evidence map›Paper›PMID 33954026›Full record

ArticlePeerJ2021

ZebraShare: a new venue for rapid dissemination of zebrafish mutant data.

April DeLaurier, Douglas G Howe, Leyla Ruzicka, Adam N Carte, Lacie Mishoe Hernandez, Kali J Wiggins, Mika M Gallati, Kayce Vanpelt, Frances Loyo Rosado, Katlin G Pugh and 4 more

Open access · goldAbstract read
In one paragraph

Article in PeerJ, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 97% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 2 countries.

April DeLaurier *Department of Biology and Geology, University of South Carolina -Aiken, Aiken, SC, United States of America.
Douglas G HoweThe Institute of Neuroscience, University of Oregon, Eugene, OR, United States of America.
Leyla RuzickaThe Institute of Neuroscience, University of Oregon, Eugene, OR, United States of America.
Adam N CarteDepartment of Molecular and Cellular Biology, Harvard University, Cambridge, MA, United States of America.
Lacie Mishoe HernandezDepartment of Biology and Geology, University of South Carolina -Aiken, Aiken, SC, United States of America.
Kali J WigginsDepartment of Biology and Geology, University of South Carolina -Aiken, Aiken, SC, United States of America.
Mika M GallatiSchool of Biology and Ecology, University of Maine, Orono, ME, United States of America.
Kayce VanpeltDepartment of Biology and Geology, University of South Carolina -Aiken, Aiken, SC, United States of America.
Frances Loyo RosadoDepartment of Biology and Geology, University of South Carolina -Aiken, Aiken, SC, United States of America.
Katlin G PughDepartment of Biology and Geology, University of South Carolina -Aiken, Aiken, SC, United States of America.
Chasey J ShabdueDepartment of Biology and Geology, University of South Carolina -Aiken, Aiken, SC, United States of America.
Khadijah JihadDepartment of Biology and Geology, University of South Carolina -Aiken, Aiken, SC, United States of America.
Summer B ThymeDepartment of Neurobiology, University of Alabama -Birmingham, Birmingham, AL, United States of America.
Jared C Talbot *School of Biology and Ecology, University of Maine, Orono, ME, United States of America.
University of South Carolina Aiken · USUniversity of Maine · USUniversity of Oregon · USHarvard University · USUniversity of Alabama at Birmingham · US

Funding

South Carolina IDeA Networks of Biomedical Research (SC INBRE V)P20GM103499 · NIGMS · UNIVERSITY OF SOUTH CAROLINA AT COLUMBIA · PI EDIE C GOLDSMITH · 2012 to 2026
$61.0M
Text mining in the CloudU24HG010859 · NHGRI · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI CAROL J BULT, PAUL Warren STERNBERG · 2019 to 2026
$42.0M
ZFIN: The Zebrafish Model Organism DatabaseU41HG002659 · NHGRI · UNIVERSITY OF OREGON · PI WESTERFIELD, MONTE · 2011 to 2020
$30.7M
ZFIN: The Zebrafish Model Organism DatabaseU24HG002659 · NHGRI · UNIVERSITY OF OREGON · PI WESTERFIELD, MONTE · 2021 to 2025
$10.8M
Developmental regulation of oscillatory expressionR01GM117964 · NIGMS · OHIO STATE UNIVERSITY · PI AMACHER, SHARON L · 2015 to 2024
$2.6M
Training in neuromuscular diseasesT32NS077984 · NINDS · OHIO STATE UNIVERSITY · PI GUTTRIDGE, DENIS C, MENDELL, JERRY ROY · 2012 to 2016
$946k
Functional Analysis of Schizophrenia-Associated GenesR00MH110603 · NIMH · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI THYME, SUMMER B · 2019 to 2021
$747k
Targeted genome modification in zebrafish using zinc finger nucleasesR01GM088041 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI AMACHER, SHARON L · 2010 to 2012
$737k
FUNCTIONAL ANALYSIS OF SCHIZOPHRENIA-ASSOCIATED GENESK99MH110603 · NIMH · HARVARD UNIVERSITY · PI THYME, SUMMER B · 2017 to 2018
$245k
NHGRI NIH HHS U24 HG002659NHGRI NIH HHS U24 HG010859NHGRI NIH HHS U41 HG002659NIGMS NIH HHS P20 GM103499NIGMS NIH HHS R01 GM088041NIGMS NIH HHS R01 GM117964NIMH NIH HHS K99 MH110603NIMH NIH HHS R00 MH110603NINDS NIH HHS T32 NS077984
6 · The paper itself

Abstract

backgroundIn the past decade, the zebrafish community has widely embraced targeted mutagenesis technologies, resulting in an abundance of mutant lines. While many lines have proven to be useful for investigating gene function, many have also shown no apparent phenotype, or phenotypes not of interest to the originating lab. In order for labs to document and share information about these lines, we have created ZebraShare as a new resource offered within ZFIN.

methodsZebraShare involves a form-based submission process generated by ZFIN. The ZebraShare interface (https://zfin.org/action/zebrashare) can be accessed on ZFIN under "Submit Data". Users download the Submission Workbook and complete the required fields, then submit the completed workbook with associated images and captions, generating a new ZFIN publication record. ZFIN curators add the submitted phenotype and mutant information to the ZFIN database, provide mapping information about mutations, and cross reference this information across the appropriate ZFIN databases. We present here examples of ZebraShare submissions, including

resultsUsers can find ZebraShare submissions by searching ZFIN for specific alleles or line designations, just as for alleles submitted through the normal process. We present several potential examples of submission types to ZebraShare including a phenotypic mutants, mildly phenotypic, and early lethal mutants. Mutants for

conclusionZebraShare provides an opportunity for researchers to directly share information about mutant lines within ZFIN, which is widely used by the community as a central database of information about zebrafish lines. Submissions of alleles with a phenotypic or unexpected phenotypes is encouraged to promote collaborations, disseminate lines, reduce redundancy of effort and to promote efficient use of time and resources. We anticipate that as submissions to ZebraShare increase, they will help build an ultimately more complete picture of zebrafish genetics and development.

Indexed as

Collaborationctnnd1kdm1alsd1nhp2l1phf21asnu13Zebrafish

Identifiers

PMID33954026
PMCPMC8051354
OpenAlexW3153739146

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.