Evidence map›Paper›PMID 33953314›Full record

ArticleCommunications biology2021

High biodiversity in a benzene-degrading nitrate-reducing culture is sustained by a few primary consumers.

Chrats Melkonian, Lucas Fillinger, Siavash Atashgahi, Ulisses Nunes da Rocha, Esther Kuiper, Brett Olivier, Martin Braster, Willi Gottstein, Rick Helmus, John R Parsons and 7 more

Erratum issuedAbstract read
In one paragraph

Article in Communications biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors.

Chrats MelkonianDepartment of Molecular Cell Biology, AIMMS, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands. chrats.melkonian@gmail.com.ORCID http://orcid.org/0000-0002-1448-5542
Lucas FillingerDepartment of Functional and Evolutionary Ecology, University of Vienna, Vienna, Austria.ORCID http://orcid.org/0000-0001-5341-8097
Siavash AtashgahiLaboratory of Microbiology, Wageningen University & Research, Wageningen, The Netherlands.
Ulisses Nunes da RochaDepartment of Environmental Microbiology, Helmholtz Centre for Environmental Research, Leipzig, Germany.
Esther KuiperDepartment of Molecular Cell Biology, AIMMS, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands.
Brett OlivierDepartment of Molecular Cell Biology, AIMMS, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands.ORCID http://orcid.org/0000-0002-5293-5321
Martin BrasterDepartment of Molecular Cell Biology, AIMMS, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands.
Willi GottsteinDepartment of Molecular Cell Biology, AIMMS, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands.
Rick HelmusInstitute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, The Netherlands.ORCID http://orcid.org/0000-0001-9401-3133
John R ParsonsInstitute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, The Netherlands.
Hauke SmidtLaboratory of Microbiology, Wageningen University & Research, Wageningen, The Netherlands.ORCID http://orcid.org/0000-0002-6138-5026
Marcelle van der WaalsUnit Subsurface and Groundwater Systems, Deltares, Utrecht, The Netherlands.
Jan GerritseUnit Subsurface and Groundwater Systems, Deltares, Utrecht, The Netherlands.
Bernd W BrandtDepartment of Preventive Dentistry, Academic Centre for Dentistry Amsterdam, University of Amsterdam and Vrije Universiteit Amsterdam, Amsterdam, The Netherlands.ORCID http://orcid.org/0000-0002-1155-1989
Wilfred F M RölingDepartment of Molecular Cell Biology, AIMMS, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands.
Douwe MolenaarDepartment of Molecular Cell Biology, AIMMS, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands.
Rob J M van SpanningDepartment of Molecular Cell Biology, AIMMS, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands. rob.van.spanning@vu.nl.ORCID http://orcid.org/0000-0002-6879-4770

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A key question in microbial ecology is what the driving forces behind the persistence of large biodiversity in natural environments are. We studied a microbial community with more than 100 different types of species which evolved in a 15-years old bioreactor with benzene as the main carbon and energy source and nitrate as the electron acceptor. Using genome-centric metagenomics plus metatranscriptomics, we demonstrate that most of the community members likely feed on metabolic left-overs or on necromass while only a few of them, from families Rhodocyclaceae and Peptococcaceae, are candidates to degrade benzene. We verify with an additional succession experiment using metabolomics and metabarcoding that these few community members are the actual drivers of benzene degradation. As such, we hypothesize that high species richness is maintained and the complexity of a natural community is stabilized in a controlled environment by the interdependencies between the few benzene degraders and the rest of the community members, ultimately resulting in a food web with different trophic levels.

Indexed as

Biodegradation, EnvironmentalBiodiversityMetagenomeBacteriaBenzeneNitratesBenzeneNitrates

Identifiers

PMID33953314
PMCPMC8099898

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.