Evidence map›Paper›PMID 33953221›Full record

ArticleScientific reports2021

Selection of nitrogen responsive root architectural traits in spinach using machine learning and genetic correlations.

Henry O Awika, Amit K Mishra, Haramrit Gill, James DiPiazza, Carlos A Avila, Vijay Joshi

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
5.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 30 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Henry O AwikaTexas A&M AgriLife Research and Extension Center, Weslaco, TX, 78596, USA.
Amit K MishraTexas A&M AgriLife Research and Extension Center, Uvalde, TX, 78801, USA.
Haramrit GillDepartment of Horticultural Sciences, Texas A&M University, College Station, TX, 77843, USA.
James DiPiazzaTexas A&M AgriLife Research and Extension Center, Uvalde, TX, 78801, USA.
Carlos A AvilaTexas A&M AgriLife Research and Extension Center, Weslaco, TX, 78596, USA.ORCID 0000-0002-1969-4706
Vijay JoshiTexas A&M AgriLife Research and Extension Center, Uvalde, TX, 78801, USA. Vijay.Joshi@tamu.edu.ORCID 0000-0001-6803-4379
Texas A&M University · USTexas A&M University System · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The efficient acquisition and transport of nutrients by plants largely depend on the root architecture. Due to the absence of complex microbial network interactions and soil heterogeneity in a restricted soilless medium, the architecture of roots is a function of genetics defined by the soilless matrix and exogenously supplied nutrients such as nitrogen (N). The knowledge of root trait combinations that offer the optimal nitrogen use efficiency (NUE) is far from being conclusive. The objective of this study was to define the root trait(s) that best predicts and correlates with vegetative biomass under differed N treatments. We used eight image-derived root architectural traits of 202 diverse spinach lines grown in two N concentrations (high N, HN, and low N, LN) in randomized complete blocks design. Supervised random forest (RF) machine learning augmented by ranger hyperparameter grid search was used to predict the variable importance of the root traits. We also determined the broad-sense heritability (H) and genetic (r

Indexed as

BiomassMachine LearningNitrogenPhenotypePlant RootsQuantitative Trait, HeritableSeedlingsSpinacia oleraceaNitrogen

Identifiers

PMID33953221
PMCPMC8100178
OpenAlexW3157552158

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.