Evidence map›Paper›PMID 33953203›Full record

ArticleNature communications2021

Regression plane concept for analysing continuous cellular processes with machine learning.

Abel Szkalisity, Filippo Piccinini, Attila Beleon, Tamas Balassa, Istvan Gergely Varga, Ede Migh, Csaba Molnar, Lassi Paavolainen, Sanna Timonen, Indranil Banerjee and 7 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Artificial Intelligence Methods in Infection Biology Research.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Computational and structural biotechnology journal · 2022
    Article
  8. Frontiers in immunology · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 6 institutions in 6 countries.

Abel SzkalisitySynthetic and Systems Biology Unit, Biological Research Centre (BRC), Szeged, Hungary.
Filippo PiccininiIstituto Scientifico Romagnolo per lo Studio e la Cura dei Tumori (IRST) IRCCS, Meldola, FC, Italy.ORCID 0000-0002-0371-7782
Attila BeleonSynthetic and Systems Biology Unit, Biological Research Centre (BRC), Szeged, Hungary.
Tamas BalassaSynthetic and Systems Biology Unit, Biological Research Centre (BRC), Szeged, Hungary.
Istvan Gergely VargaInstitute of Genetics, Biological Research Center (BRC), Szeged, Hungary.ORCID 0000-0001-9073-5788
Ede MighSynthetic and Systems Biology Unit, Biological Research Centre (BRC), Szeged, Hungary.
Csaba MolnarSynthetic and Systems Biology Unit, Biological Research Centre (BRC), Szeged, Hungary.
Lassi PaavolainenInstitute for Molecular Medicine Finland-FIMM, Helsinki Institute of Life Science-HiLIFE, University of Helsinki, Helsinki, Finland.
Sanna TimonenInstitute for Molecular Medicine Finland-FIMM, Helsinki Institute of Life Science-HiLIFE, University of Helsinki, Helsinki, Finland.
Indranil BanerjeeIndian Institute of Science Education and Research (IISER), Mohali, India.
Elina IkonenDepartment of Anatomy and Stem Cells and Metabolism Research Program, Faculty of Medicine, University of Helsinki, Helsinki, Finland.ORCID 0000-0001-8382-1135
Yohei YamauchiSchool of Cellular and Molecular Medicine, University of Bristol, BS8 1TD University Walk, Bristol, UK.ORCID 0000-0002-8233-9133
Istvan AndoInstitute of Genetics, Biological Research Center (BRC), Szeged, Hungary.
Jaakko PeltonenFaculty of Information Technology and Communication Sciences, Tampere University, FI-33014 Tampere University, Tampere, Finland.
Vilja PietiäinenInstitute for Molecular Medicine Finland-FIMM, Helsinki Institute of Life Science-HiLIFE, University of Helsinki, Helsinki, Finland.ORCID 0000-0003-3125-2406
Viktor HontiInstitute of Genetics, Biological Research Center (BRC), Szeged, Hungary.
Peter HorvathSynthetic and Systems Biology Unit, Biological Research Centre (BRC), Szeged, Hungary. horvath.peter@brc.hu.ORCID 0000-0002-4492-1798
HUN-REN Szegedi Biológiai Kutatóközpont · HUUniversity of Helsinki · FIIndian Institute of Science Education and Research Mohali · INIstituto Scientifico Romagnolo per lo Studio e la Cura dei Tumori · ITTampere University · FIUniversity of Bristol · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Biological processes are inherently continuous, and the chance of phenotypic discovery is significantly restricted by discretising them. Using multi-parametric active regression we introduce the Regression Plane (RP), a user-friendly discovery tool enabling class-free phenotypic supervised machine learning, to describe and explore biological data in a continuous manner. First, we compare traditional classification with regression in a simulated experimental setup. Second, we use our framework to identify genes involved in regulating triglyceride levels in human cells. Subsequently, we analyse a time-lapse dataset on mitosis to demonstrate that the proposed methodology is capable of modelling complex processes at infinite resolution. Finally, we show that hemocyte differentiation in Drosophila melanogaster has continuous characteristics.

Indexed as

Biological PhenomenaCell Physiological PhenomenaMachine LearningAnimalsCarcinoma, HepatocellularCell CycleCell DifferentiationCell Line, TumorDrosophila melanogasterHumansMembrane ProteinsSupervised Machine LearningMembrane ProteinsTM6SF2 protein, human

Identifiers

PMID33953203
PMCPMC8100172
OpenAlexW3159710385

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.