Evidence map›Paper›PMID 33953191›Full record

ArticleNature communications2021

Single-molecule imaging reveals replication fork coupled formation of G-quadruplex structures hinders local replication stress signaling.

Wei Ting C Lee, Yandong Yin, Michael J Morten, Peter Tonzi, Pam Pam Gwo, Diana C Odermatt, Mauro Modesti, Sharon B Cantor, Kerstin Gari, Tony T Huang and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 76 papers.

0numbers the graph read from it
0cells of the map it votes in
76citing papers in PubMed
6.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

76 citing papers in PubMed, 100 citations in OpenAlex.

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  14. Dynamic Assemblies in Genome Maintenance.Advances in experimental medicine and biology · 2026
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16 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 3 countries.

Wei Ting C LeeDepartment of Biochemistry and Molecular Pharmacology, New York University School of Medicine, New York, NY, USA.
Yandong YinDepartment of Biochemistry and Molecular Pharmacology, New York University School of Medicine, New York, NY, USA.ORCID 0000-0003-2499-871X
Michael J MortenDepartment of Biochemistry and Molecular Pharmacology, New York University School of Medicine, New York, NY, USA.ORCID 0000-0002-1206-6133
Peter TonziDepartment of Biochemistry and Molecular Pharmacology, New York University School of Medicine, New York, NY, USA.
Pam Pam GwoDepartment of Biochemistry and Molecular Pharmacology, New York University School of Medicine, New York, NY, USA.
Diana C OdermattInstitute of Molecular Cancer Research, University of Zurich, Zurich, Switzerland.
Mauro ModestiCancer Research Center of Marseille, CNRS UMR7258, Inserm U1068, Institut Paoli-Calmettes, Aix-Marseille Université, Marseille, France.ORCID 0000-0002-4964-331X
Sharon B CantorDepartment of Molecular, Cell and Cancer Biology, University of Massachusetts Medical School, Worcester, MA, USA.
Kerstin GariInstitute of Molecular Cancer Research, University of Zurich, Zurich, Switzerland.ORCID 0000-0003-1276-8941
Tony T HuangDepartment of Biochemistry and Molecular Pharmacology, New York University School of Medicine, New York, NY, USA.
Eli RothenbergDepartment of Biochemistry and Molecular Pharmacology, New York University School of Medicine, New York, NY, USA. Eli.Rothenberg@nyumc.org.ORCID 0000-0002-1382-1380
New York University · USUniversity of Zurich · CHCentre National de la Recherche Scientifique · FRUniversity of Massachusetts Chan Medical School · US

Funding

Structural determinants of Pol theta functionP01CA247773 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DALE A RAMSDEN · 2020 to 2026
$15.2M
Mechanisms of Human DNA Double-Strand Break Repair via Quantitative Single-Molecule Imaging - Equipment SupplementR35GM134947 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Eli Rothenberg · 2020 to 2026
$3.4M
Mechanism and Fidelity of RAG mediated DNA recombinationR01AI153040 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ROTHENBERG, ELI · 2020 to 2024
$2.7M
Understanding the mechanistic role of genome stability pathways in regulating cell homeostasisR35GM139610 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Tony Tung Huang · 2021 to 2026
$2.6M
Defining BRCA replication dysfunction in therapy responseR01CA254037 · NCI · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI CANTOR, SHARON B · 2020 to 2025
$2.6M
Defining the molecular basis of oncogene-induced replication stressR01ES031658 · NIEHS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI HUANG, TONY TUNG · 2021 to 2025
$2.2M
FANCJ dependent pathways in replication stressR01CA225018 · NCI · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI CANTOR, SHARON B · 2018 to 2022
$1.9M
NCI NIH HHS P01 CA247773NCI NIH HHS R01 CA225018NCI NIH HHS R01 CA254037NIAID NIH HHS R01 AI153040NIEHS NIH HHS R01 ES031658NIGMS NIH HHS R35 GM134947NIGMS NIH HHS R35 GM139610
6 · The paper itself

Abstract

Guanine-rich DNA sequences occur throughout the human genome and can transiently form G-quadruplex (G4) structures that may obstruct DNA replication, leading to genomic instability. Here, we apply multi-color single-molecule localization microscopy (SMLM) coupled with robust data-mining algorithms to quantitatively visualize replication fork (RF)-coupled formation and spatial-association of endogenous G4s. Using this data, we investigate the effects of G4s on replisome dynamics and organization. We show that a small fraction of active replication forks spontaneously form G4s at newly unwound DNA immediately behind the MCM helicase and before nascent DNA synthesis. These G4s locally perturb replisome dynamics and organization by reducing DNA synthesis and limiting the binding of the single-strand DNA-binding protein RPA. We find that the resolution of RF-coupled G4s is mediated by an interplay between RPA and the FANCJ helicase. FANCJ deficiency leads to G4 accumulation, DNA damage at G4-associated replication forks, and silencing of the RPA-mediated replication stress response. Our study provides first-hand evidence of the intrinsic, RF-coupled formation of G4 structures, offering unique mechanistic insights into the interference and regulation of stable G4s at replication forks and their effect on RPA-associated fork signaling and genomic instability.

Indexed as

G-QuadruplexesAnimalsBiophysicsCell LineDNADNA-Binding ProteinsDNA DamageDNA HelicasesDNA ReplicationGenomic InstabilityHumansRecombinant ProteinsSf9 CellsSingle Molecule ImagingDNADNA-Binding ProteinsDNA HelicasesRecombinant Proteins

Identifiers

PMID33953191
PMCPMC8099879
OpenAlexW3159185663

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.