Evidence map›Paper›PMID 33953184›Full record

ArticleNature communications2021

Osteocyte transcriptome mapping identifies a molecular landscape controlling skeletal homeostasis and susceptibility to skeletal disease.

Scott E Youlten, John P Kemp, John G Logan, Elena J Ghirardello, Claudio M Sergio, Michael R G Dack, Siobhan E Guilfoyle, Victoria D Leitch, Natalie C Butterfield, Davide Komla-Ebri and 27 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 92 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
92citing papers in PubMed, 1 pooled it
6.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

92 citing papers in PubMed, 1 synthesis or guideline pooled it, 117 citations in OpenAlex.

  1. Protective role of irisin on bone in osteoporosis: a systematic review of rodent studies.Osteoporosis international : a journal established as result of cooperation between the European Foundation for Osteoporosis and the National Osteoporosis Foundation of the USA · 2025
    Pooled it
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  5. Aging Exacerbates Binge Ethanol-Mediated Bone Toxicity in Mice.Alcohol, clinical & experimental research · 2026
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  16. CFTR mediates ClNature communications · 2026
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  17. Review
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32 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

37 authors at 12 institutions in 7 countries.

Scott E YoultenBone Biology, Garvan Institute of Medical Research, Darlinghurst, Sydney, NSW, Australia.ORCID 0000-0001-9314-2945
John P KempUniversity of Queensland Diamantina Institute, UQ, Brisbane, QLD, Australia.ORCID 0000-0002-9105-2249
John G LoganMolecular Endocrinology Laboratory, Department of Metabolism, Digestion and Reproduction, Imperial College London, London, UK.
Elena J GhirardelloMolecular Endocrinology Laboratory, Department of Metabolism, Digestion and Reproduction, Imperial College London, London, UK.
Claudio M SergioBone Biology, Garvan Institute of Medical Research, Darlinghurst, Sydney, NSW, Australia.ORCID 0000-0002-5426-0583
Michael R G DackMolecular Endocrinology Laboratory, Department of Metabolism, Digestion and Reproduction, Imperial College London, London, UK.
Siobhan E GuilfoyleMolecular Endocrinology Laboratory, Department of Metabolism, Digestion and Reproduction, Imperial College London, London, UK.
Victoria D LeitchMolecular Endocrinology Laboratory, Department of Metabolism, Digestion and Reproduction, Imperial College London, London, UK.ORCID 0000-0001-5760-2887
Natalie C ButterfieldMolecular Endocrinology Laboratory, Department of Metabolism, Digestion and Reproduction, Imperial College London, London, UK.ORCID 0000-0002-5209-7508
Davide Komla-EbriMolecular Endocrinology Laboratory, Department of Metabolism, Digestion and Reproduction, Imperial College London, London, UK.ORCID 0000-0002-8381-5381
Ryan C ChaiBone Biology, Garvan Institute of Medical Research, Darlinghurst, Sydney, NSW, Australia.
Alexander P CorrBone Biology, Garvan Institute of Medical Research, Darlinghurst, Sydney, NSW, Australia.ORCID 0000-0002-8450-012X
James T SmithBone Biology, Garvan Institute of Medical Research, Darlinghurst, Sydney, NSW, Australia.ORCID 0000-0003-0528-0649
Sindhu T MohantyBone Biology, Garvan Institute of Medical Research, Darlinghurst, Sydney, NSW, Australia.ORCID 0000-0001-7512-8808
John A MorrisNew York Genome Center, New York, NY, USA.ORCID 0000-0003-2769-8202
Michelle M McDonaldBone Biology, Garvan Institute of Medical Research, Darlinghurst, Sydney, NSW, Australia.
Julian M W QuinnBone Biology, Garvan Institute of Medical Research, Darlinghurst, Sydney, NSW, Australia.ORCID 0000-0001-9674-9646
Amelia R McGladeBone Biology, Garvan Institute of Medical Research, Darlinghurst, Sydney, NSW, Australia.
Nenad BartonicekGarvan Institute of Medical Research and The Kinghorn Cancer Centre, Darlinghurst, Sydney, NSW, Australia.
Matt JanssonViapath Genetics Laboratory, Viapath Analytics LLP, Guy's Hospital, London, UK.
Konstantinos HatzikotoulasInstitute of Translational Genomics, Helmholtz Zentrum München - German Research Center for Environmental Health, Phoenix, AZ, USA.ORCID 0000-0002-4699-3672
Melita D IrvingDepartment of Clinical Genetics, Guy's and St Thomas' NHS Trust, London, UK.
Ana Beleza-MeirelesDepartment of Clinical Genetics, University Hospitals Bristol, Bristol, UK.
Fernando RivadeneiraDepartment of Internal Medicine, Erasmus, MC, Rotterdam, the Netherlands.ORCID 0000-0001-9435-9441
Emma DuncanFaculty of Life Sciences and Medicine, Department of Twin Research & Genetic Epidemiology, School of Life Course Sciences, King's College London, London, UK.ORCID 0000-0002-8143-4403
J Brent RichardsFaculty of Life Sciences and Medicine, Department of Twin Research & Genetic Epidemiology, School of Life Course Sciences, King's College London, London, UK.ORCID 0000-0002-3746-9086
David J AdamsWellcome Sanger Institute, Hinxton, UK.ORCID 0000-0001-9490-0306
Christopher J LelliottWellcome Sanger Institute, Hinxton, UK.ORCID 0000-0001-8087-4530
Robert BrinkSt Vincent's Clinical School, Faculty of Medicine, UNSW Sydney, Sydney, NSW, Australia.
Tri Giang PhanSt Vincent's Clinical School, Faculty of Medicine, UNSW Sydney, Sydney, NSW, Australia.ORCID 0000-0002-4909-2984
John A EismanBone Biology, Garvan Institute of Medical Research, Darlinghurst, Sydney, NSW, Australia.
David M EvansUniversity of Queensland Diamantina Institute, UQ, Brisbane, QLD, Australia.ORCID 0000-0003-0663-4621
Eleftheria ZegginiInstitute of Translational Genomics, Helmholtz Zentrum München - German Research Center for Environmental Health, Phoenix, AZ, USA.ORCID 0000-0003-4238-659X
Paul A BaldockBone Biology, Garvan Institute of Medical Research, Darlinghurst, Sydney, NSW, Australia.
J H Duncan BassettMolecular Endocrinology Laboratory, Department of Metabolism, Digestion and Reproduction, Imperial College London, London, UK. d.bassett@imperial.ac.uk.ORCID 0000-0003-0817-0082
Graham R WilliamsMolecular Endocrinology Laboratory, Department of Metabolism, Digestion and Reproduction, Imperial College London, London, UK. graham.williams@imperial.ac.uk.ORCID 0000-0002-8555-8219
Peter I CroucherBone Biology, Garvan Institute of Medical Research, Darlinghurst, Sydney, NSW, Australia. p.croucher@garvan.org.au.ORCID 0000-0002-7102-2413
Garvan Institute of Medical Research · AUImperial College London · GBWellcome Sanger Institute · GBThe University of Queensland · AUErasmus MC · NLGuy's and St Thomas' NHS Foundation Trust · GBGuy's Hospital · GBKing's College London · GBMIT University · MKNew York Genome Center · USThe University of Sydney · AUTranslational Research Institute · AU

Funding

Cancer Research UKDepartment of HealthMedical Research Council MC_UU_12013/4Wellcome TrustWellcome Trust 101123/Z/13/AWellcome Trust 110140/Z/15/ZWellcome Trust 110141/Z/15/Z
6 · The paper itself

Abstract

Osteocytes are master regulators of the skeleton. We mapped the transcriptome of osteocytes from different skeletal sites, across age and sexes in mice to reveal genes and molecular programs that control this complex cellular-network. We define an osteocyte transcriptome signature of 1239 genes that distinguishes osteocytes from other cells. 77% have no previously known role in the skeleton and are enriched for genes regulating neuronal network formation, suggesting this programme is important in osteocyte communication. We evaluated 19 skeletal parameters in 733 knockout mouse lines and reveal 26 osteocyte transcriptome signature genes that control bone structure and function. We showed osteocyte transcriptome signature genes are enriched for human orthologs that cause monogenic skeletal disorders (P = 2.4 × 10

Indexed as

HomeostasisTranscriptomeAge FactorsAnimalsBone and BonesBone DiseasesComputational BiologyFemaleHumansMaleMiceMice, KnockoutOsteocytesOsteoporosisSequence Analysis, RNASex Factors

Identifiers

PMID33953184
PMCPMC8100170
OpenAlexW3157344667

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.