Evidence map›Paper›PMID 33949756›Full record

ArticleMolecular plant pathology2021

The identification of a transposon affecting the asexual reproduction of the wheat pathogen Zymoseptoria tritici.

Chen Wang, Andrew W Milgate, Peter S Solomon, Megan C McDonald

Open access · goldAbstract read
In one paragraph

Article in Molecular plant pathology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
7.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 45 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Chen WangDivision of Plant Sciences, Research School of Biology, The Australian National University, Canberra, ACT, Australia.ORCID 0000-0002-0508-0084
Andrew W MilgateNSW Department of Primary Industries, Wagga Wagga Agricultural Institute, Wagga Wagga, NSW, Australia.ORCID 0000-0001-6237-9018
Peter S SolomonDivision of Plant Sciences, Research School of Biology, The Australian National University, Canberra, ACT, Australia.ORCID 0000-0002-5130-7307
Megan C McDonaldDivision of Plant Sciences, Research School of Biology, The Australian National University, Canberra, ACT, Australia.ORCID 0000-0002-9129-7393
Australian National University · AUWagga Wagga Base Hospital · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Zymoseptoria tritici, the causal agent of Septoria tritici blotch, is a fungal wheat pathogen that causes significant global yield losses. Within Z. tritici populations, quantitative differences in virulence among different isolates are commonly observed; however, the genetic components that underpin these differences remain elusive. In this study, intraspecific comparative transcriptomic analysis was used to identify candidate genes that contribute to differences in virulence on the wheat cultivar WW2449. This led to the identification of a multicopy gene that was not expressed in the high-virulence isolate when compared to the medium- and low-virulence isolates. Further investigation suggested this gene resides in a 7.9-kb transposon. Subsequent long-read sequencing of the isolates used in the transcriptomic analysis confirmed that this gene did reside in an active Class II transposon, which is composed of four genes named REP9-1 to -4. Silencing and overexpression of REP9-1 in two distinct genetic backgrounds demonstrated that its expression alone reduces the number of pycnidia produced by Z. tritici during infection. The REP9-1 gene identified within a Class II transposon is the first discovery of a gene in a transposable element that influences the virulence of Z. tritici. This discovery adds further complexity to genetic loci that contribute to quantitative virulence in this important pathogen.

Indexed as

TranscriptomeAscomycotaGene Expression ProfilingGenetic LociPhylogenyPlant DiseasesQuantitative Trait LociReproduction, AsexualTriticumVirulenceeffectorquantitative virulencetranscriptomicstransposonwheatZymoseptoria tritici

Identifiers

PMID33949756
PMCPMC8232023
OpenAlexW3159958833

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.