Evidence map›Paper›PMID 33947893›Full record

ArticleScientific reports2021

Structural characterization of a Type B chloramphenicol acetyltransferase from the emerging pathogen Elizabethkingia anophelis NUHP1.

Seyed Mohammad Ghafoori, Alyssa M Robles, Angelika M Arada, Paniz Shirmast, David M Dranow, Stephen J Mayclin, Donald D Lorimer, Peter J Myler, Thomas E Edwards, Misty L Kuhn and 1 more

Abstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Multidrug-ResistantInfection and drug resistance · 2025
    Article
  4. Genomic profiling ofFrontiers in microbiology · 2025
    Article
  5. Article
  6. Article
  7. Article
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Seyed Mohammad GhafooriSchool of Biomedical Sciences, Charles Sturt University, Wagga Wagga, NSW, 2650, Australia.
Alyssa M RoblesDepartment of Chemistry and Biochemistry, San Francisco State University, San Francisco, CA, USA.
Angelika M AradaDepartment of Chemistry and Biochemistry, San Francisco State University, San Francisco, CA, USA.
Paniz ShirmastSchool of Biomedical Sciences, Charles Sturt University, Wagga Wagga, NSW, 2650, Australia.
David M DranowSeattle Structural Genomics Center for Infectious Disease, Seattle, WA, USA.
Stephen J MayclinSeattle Structural Genomics Center for Infectious Disease, Seattle, WA, USA.
Donald D LorimerSeattle Structural Genomics Center for Infectious Disease, Seattle, WA, USA.
Peter J MylerSeattle Structural Genomics Center for Infectious Disease, Seattle, WA, USA.
Thomas E EdwardsSeattle Structural Genomics Center for Infectious Disease, Seattle, WA, USA.
Misty L KuhnDepartment of Chemistry and Biochemistry, San Francisco State University, San Francisco, CA, USA.
Jade K ForwoodSchool of Biomedical Sciences, Charles Sturt University, Wagga Wagga, NSW, 2650, Australia. jforwood@csu.edu.au.

Funding

UPGRADE OF COMMUNICATIONS INFRASTRUCTURET34GM008574 · NIGMS · SAN FRANCISCO STATE UNIVERSITY · PI BAYLISS, FRANK T, ESQUERRA, RAYMOND M. · 1996 to 2021
$14.5M
NIAID NIH HHS HHSN272201700059CNIGMS NIH HHS T34 GM008574
6 · The paper itself

Abstract

Elizabethkingia anophelis is an emerging multidrug resistant pathogen that has caused several global outbreaks. E. anophelis belongs to the large family of Flavobacteriaceae, which contains many bacteria that are plant, bird, fish, and human pathogens. Several antibiotic resistance genes are found within the E. anophelis genome, including a chloramphenicol acetyltransferase (CAT). CATs play important roles in antibiotic resistance and can be transferred in genetic mobile elements. They catalyse the acetylation of the antibiotic chloramphenicol, thereby reducing its effectiveness as a viable drug for therapy. Here, we determined the high-resolution crystal structure of a CAT protein from the E. anophelis NUHP1 strain that caused a Singaporean outbreak. Its structure does not resemble that of the classical Type A CATs but rather exhibits significant similarity to other previously characterized Type B (CatB) proteins from Pseudomonas aeruginosa, Vibrio cholerae and Vibrio vulnificus, which adopt a hexapeptide repeat fold. Moreover, the CAT protein from E. anophelis displayed high sequence similarity to other clinically validated chloramphenicol resistance genes, indicating it may also play a role in resistance to this antibiotic. Our work expands the very limited structural and functional coverage of proteins from Flavobacteriaceae pathogens which are becoming increasingly more problematic.

Indexed as

Anti-Bacterial AgentsChloramphenicol O-AcetyltransferaseDrug Resistance, BacterialFlavobacteriaceaeGenome, BacterialAnti-Bacterial AgentsChloramphenicol O-Acetyltransferase

Identifiers

PMID33947893
PMCPMC8096840

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.