Evidence map›Paper›PMID 33947865›Full record

ArticleNature communications2021

An Arabidopsis AT-hook motif nuclear protein mediates somatic embryogenesis and coinciding genome duplication.

Omid Karami, Arezoo Rahimi, Patrick Mak, Anneke Horstman, Kim Boutilier, Monique Compier, Bert van der Zaal, Remko Offringa

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
8.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 62 citations in OpenAlex.

  1. Article
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  9. Cloning ofInternational journal of molecular sciences · 2025
    Article
  10. Genome-Wide Analysis of the AT-Hook Gene Family inPlants (Basel, Switzerland) · 2025
    Article
  11. Genome-Wide Identification and Analysis of theInternational journal of molecular sciences · 2025
    Article
  12. Article
  13. Article
  14. Review
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  17. Review
  18. Article
  19. Article
  20. Systematical Characterization of theInternational journal of molecular sciences · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Omid KaramiPlant Developmental Genetics, Institute of Biology Leiden, Leiden University, Leiden, Netherlands. o.karami@biology.leidenuniv.nl.
Arezoo RahimiPlant Developmental Genetics, Institute of Biology Leiden, Leiden University, Leiden, Netherlands.
Patrick MakPlant Developmental Genetics, Institute of Biology Leiden, Leiden University, Leiden, Netherlands.
Anneke HorstmanBioscience, Wageningen University and Research, Wageningen, Netherlands.ORCID http://orcid.org/0000-0003-2971-2047
Kim BoutilierBioscience, Wageningen University and Research, Wageningen, Netherlands.
Monique CompierPlant Developmental Genetics, Institute of Biology Leiden, Leiden University, Leiden, Netherlands.
Bert van der ZaalPlant Developmental Genetics, Institute of Biology Leiden, Leiden University, Leiden, Netherlands.
Remko OffringaPlant Developmental Genetics, Institute of Biology Leiden, Leiden University, Leiden, Netherlands. r.offringa@biology.leidenuniv.nl.ORCID http://orcid.org/0000-0002-3293-5295
Leiden University · NLWageningen University & Research · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plant somatic cells can be reprogrammed into totipotent embryonic cells that are able to form differentiated embryos in a process called somatic embryogenesis (SE), by hormone treatment or through overexpression of certain transcription factor genes, such as BABY BOOM (BBM). Here we show that overexpression of the AT-HOOK MOTIF CONTAINING NUCLEAR LOCALIZED 15 (AHL15) gene induces formation of somatic embryos on Arabidopsis thaliana seedlings in the absence of hormone treatment. During zygotic embryogenesis, AHL15 expression starts early in embryo development, and AH15 and other AHL genes are required for proper embryo patterning and development beyond the globular stage. Moreover, AHL15 and several of its homologs are upregulated and required for SE induction upon hormone treatment, and they are required for efficient BBM-induced SE as downstream targets of BBM. A significant number of plants derived from AHL15 overexpression-induced somatic embryos are polyploid. Polyploidisation occurs by endomitosis specifically during the initiation of SE, and is caused by strong heterochromatin decondensation induced by AHL15 overexpression.

Indexed as

AT-Hook MotifsPlant Somatic Embryogenesis TechniquesArabidopsisArabidopsis ProteinsChromatin Assembly and DisassemblyChromosome SegregationGene DuplicationGene Expression Regulation, PlantHeat-Shock ResponseHistone Deacetylase InhibitorsHydroxamic AcidsPolyploidyTranscription FactorsUp-RegulationArabidopsis ProteinsBABY BOOM protein, ArabidopsisHistone Deacetylase InhibitorsHydroxamic AcidsTranscription Factorstrichostatin A

Identifiers

PMID33947865
PMCPMC8096963
OpenAlexW3159618791

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.