Evidence map›Paper›PMID 33946922›Full record

ArticleInternational journal of molecular sciences2021

SWATH Based Quantitative Proteomics Reveals Significant Lipid Metabolism in Early Myopic Guinea Pig Retina.

Jingfang Bian, Ying-Hon Sze, Dennis Yan-Yin Tse, Chi-Ho To, Sally A McFadden, Carly Siu-Yin Lam, King-Kit Li, Thomas Chuen Lam

Open access · goldAbstract readComparative Study
In one paragraph

Article in International journal of molecular sciences, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 27 citations in OpenAlex.

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  12. Mass spectrometry-based retina proteomics.Mass spectrometry reviews · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 3 countries.

Jingfang BianCentre for Myopia Research, School of Optometry, The Hong Kong Polytechnic University, Kowloon, Hong Kong, China.ORCID 0000-0003-0464-1705
Ying-Hon SzeCentre for Myopia Research, School of Optometry, The Hong Kong Polytechnic University, Kowloon, Hong Kong, China.
Dennis Yan-Yin TseCentre for Myopia Research, School of Optometry, The Hong Kong Polytechnic University, Kowloon, Hong Kong, China.ORCID 0000-0001-7561-9121
Chi-Ho ToCentre for Myopia Research, School of Optometry, The Hong Kong Polytechnic University, Kowloon, Hong Kong, China.ORCID 0000-0002-1938-8397
Sally A McFaddenSchool of Psychology, College of Engineering, Science and the Environment, University of Newcastle, Callaghan, NSW 2308, Australia.ORCID 0000-0001-6761-1592
Carly Siu-Yin LamCentre for Myopia Research, School of Optometry, The Hong Kong Polytechnic University, Kowloon, Hong Kong, China.ORCID 0000-0002-6808-5018
King-Kit LiCentre for Myopia Research, School of Optometry, The Hong Kong Polytechnic University, Kowloon, Hong Kong, China.
Thomas Chuen LamCentre for Myopia Research, School of Optometry, The Hong Kong Polytechnic University, Kowloon, Hong Kong, China.ORCID 0000-0002-3511-5620
Hong Kong Polytechnic University · HKUniversity of Newcastle Australia · AU

Funding

Australian DIIRSE International Science Linkage CG120160 (SMF)Australian Government Endeavour Cheung Kong Research Fellowship G0189472 (DYT, SMF)PolyU PhD Studentship RTX2RGC General Research Fund 15102015/15MRGC General Research Fund 15104819Shenzhen Science and Technology Innovation Commission JCYJ20180507183409601
6 · The paper itself

Abstract

Most of the previous myopic animal studies employed a single-candidate approach and lower resolution proteomics approaches that were difficult to detect minor changes, and generated limited systems-wide biological information. Hence, a complete picture of molecular events in the retina involving myopic development is lacking. Here, to investigate comprehensive retinal protein alternations and underlying molecular events in the early myopic stage, we performed a data-independent Sequential Window Acquisition of all Theoretical Mass Spectra (SWATH) based proteomic analysis coupled with different bioinformatics tools in pigmented guinea pigs after 4-day lens-induced myopia (LIM). Myopic eyes compared to untreated contralateral control eyes caused significant changes in refractive error and choroid thickness (

Indexed as

AnimalsComputational BiologyDatasets as TopicDisease Models, AnimalEye ProteinsGene Expression RegulationGene OntologyGene Regulatory NetworksGuinea PigsLipid MetabolismMetabolic Networks and PathwaysMyopiaProteomicsRetinaSoftwareTandem Mass SpectrometryEye Proteinsguinea pigslipid metabolismmyopiaproteomicsretinaSWATH-MS

Identifiers

PMID33946922
PMCPMC8124159
OpenAlexW3157841044

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.