Evidence map›Paper›PMID 33944920›Full record

ArticleMolecular biology and evolution2021

Elephant Genomes Reveal Accelerated Evolution in Mechanisms Underlying Disease Defenses.

Marc Tollis, Elliott Ferris, Michael S Campbell, Valerie K Harris, Shawn M Rupp, Tara M Harrison, Wendy K Kiso, Dennis L Schmitt, Michael M Garner, Christina Athena Aktipis and 6 more

Open access · goldAbstract read
In one paragraph

Article in Molecular biology and evolution, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed, 1 pooled it
4.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 1 synthesis or guideline pooled it, 65 citations in OpenAlex.

  1. Pooled it
  2. Evolutionary study of oncogenes and tumor suppressor genes in breast carcinoma.Journal of Taibah University Medical Sciences · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Methylation-associated mutagenesis underlies variation in the mutation spectrum across eukaryotes.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Paradoxical indeed.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  16. The Elephant and the Spandrel.Evolution, medicine, and public health · 2025
    Article
  17. Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 7 institutions in 1 country.

Marc TollisSchool of Informatics, Computing, and Cyber Systems, Northern Arizona University, Flagstaff, AZ, USA.ORCID 0000-0002-1917-2473
Elliott FerrisDepartment of Neurobiology and Anatomy, University of Utah, Salt Lake City, UT, USA.
Michael S CampbellDepartment of Genetics, University of Utah, Salt Lake City, UT, USA.
Valerie K HarrisArizona Cancer Evolution Center, Arizona State University, Tempe, AZ, USA.
Shawn M RuppArizona Cancer Evolution Center, Arizona State University, Tempe, AZ, USA.
Tara M HarrisonArizona Cancer Evolution Center, Arizona State University, Tempe, AZ, USA.
Wendy K KisoRingling Bros Center for Elephant Conservation, Polk City, FL, USA.
Dennis L SchmittRingling Bros Center for Elephant Conservation, Polk City, FL, USA.
Michael M GarnerNorthwest ZooPath, Monroe, WA, USA.
Christina Athena AktipisArizona Cancer Evolution Center, Arizona State University, Tempe, AZ, USA.
Carlo C MaleyArizona Cancer Evolution Center, Arizona State University, Tempe, AZ, USA.ORCID 0000-0002-0745-7076
Amy M BoddyArizona Cancer Evolution Center, Arizona State University, Tempe, AZ, USA.
Mark YandellDepartment of Genetics, University of Utah, Salt Lake City, UT, USA.
Christopher GreggDepartment of Neurobiology and Anatomy, University of Utah, Salt Lake City, UT, USA.
Joshua D SchiffmanArizona Cancer Evolution Center, Arizona State University, Tempe, AZ, USA.
Lisa M AbegglenArizona Cancer Evolution Center, Arizona State University, Tempe, AZ, USA.
University of Utah · USBiocom · USArizona State University · USMissouri State University · USNorth Carolina State University · USNorthern Arizona University · USUniversity of California, Santa Barbara · US

Funding

The Role of the Microbiome in Cancer Suppression and Susceptibility Across SpeciesU54CA217376 · NCI · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI MALEY, CARLO · 2018 to 2022
$8.6M
The Nature and Function of Genomic Imprinting in Monoaminergic NeuronsR01MH109577 · NIMH · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI GREGG, CHRISTOPHER · 2016 to 2025
$5.6M
Noncoding Elements Shaping Brain AgingR01AG064013 · NIA · UNIVERSITY OF UTAH · PI GREGG, CHRIS · 2019 to 2023
$1.9M
NCI NIH HHS U54 CA217376NIA NIH HHS R01 AG064013NIMH NIH HHS R01 MH109577
6 · The paper itself

Abstract

Disease susceptibility and resistance are important factors for the conservation of endangered species, including elephants. We analyzed pathology data from 26 zoos and report that Asian elephants have increased neoplasia and malignancy prevalence compared with African bush elephants. This is consistent with observed higher susceptibility to tuberculosis and elephant endotheliotropic herpesvirus (EEHV) in Asian elephants. To investigate genetic mechanisms underlying disease resistance, including differential responses between species, among other elephant traits, we sequenced multiple elephant genomes. We report a draft assembly for an Asian elephant, and defined 862 and 1,017 conserved potential regulatory elements in Asian and African bush elephants, respectively. In the genomes of both elephant species, conserved elements were significantly enriched with genes differentially expressed between the species. In Asian elephants, these putative regulatory regions were involved in immunity pathways including tumor-necrosis factor, which plays an important role in EEHV response. Genomic sequences of African bush, forest, and Asian elephant genomes revealed extensive sequence conservation at TP53 retrogene loci across three species, which may be related to TP53 functionality in elephant cancer resistance. Positive selection scans revealed outlier genes related to additional elephant traits. Our study suggests that gene regulation plays an important role in the differential inflammatory response of Asian and African elephants, leading to increased infectious disease and cancer susceptibility in Asian elephants. These genomic discoveries can inform future functional and translational studies aimed at identifying effective treatment approaches for ill elephants, which may improve conservation.

Indexed as

ElephantsHerpesviridaeHerpesviridae InfectionsAnimalsEndangered SpeciescancerconservationdiseaseEEHV, tuberculosis, genomeselephants

Identifiers

PMID33944920
PMCPMC8383897
OpenAlexW3159217387

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.