Evidence map›Paper›PMID 33943044›Full record

ArticleMolecular genetics & genomic medicine2021

A novel essential splice site variant in SPTB in a large hereditary spherocytosis family.

Taina T Nieminen, Sandya Liyanarachchi, Daniel F Comiskey, Yanqiang Wang, Wei Li, Isabella V Hendrickson, Pamela Brock, Albert de la Chapelle, Huiling He

Open access · goldAbstract readCase Reports
In one paragraph

Article in Molecular genetics & genomic medicine, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.2field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Taina T NieminenDepartment of Cancer Biology and Genetics, The Ohio State University, Columbus, Ohio, USA.
Sandya LiyanarachchiDepartment of Cancer Biology and Genetics, The Ohio State University, Columbus, Ohio, USA.
Daniel F ComiskeyDepartment of Cancer Biology and Genetics, The Ohio State University, Columbus, Ohio, USA.
Yanqiang WangDepartment of Cancer Biology and Genetics, The Ohio State University, Columbus, Ohio, USA.
Wei LiDepartment of Cancer Biology and Genetics, The Ohio State University, Columbus, Ohio, USA.
Isabella V HendricksonDepartment of Cancer Biology and Genetics, The Ohio State University, Columbus, Ohio, USA.
Pamela BrockDepartment of Internal Medicine, The Ohio State University Comprehensive Cancer Center, The Ohio State University, Columbus, Ohio, USA.
Albert de la ChapelleDepartment of Cancer Biology and Genetics, The Ohio State University, Columbus, Ohio, USA.
Huiling HeDepartment of Cancer Biology and Genetics, The Ohio State University, Columbus, Ohio, USA.ORCID 0000-0002-5982-3250
The Ohio State University · US

Funding

Translational Therapeutics Research Program (TT)P30CA016058 · NCI · OHIO STATE UNIVERSITY · PI Jennifer A. Woyach · 1985 to 2026
$132.3M
Selective Modulation of Thyroidal RadioiodineP01CA124570 · NCI · OHIO STATE UNIVERSITY · PI RINGEL, MATTHEW D · 2008 to 2017
$23.4M
NCI NIH HHS P01 CA124570NCI NIH HHS P30CA16058
6 · The paper itself

Abstract

backgroundWe studied a large family with 22 individuals affected with autosomal dominant hereditary spherocytosis (HS).

methodsGenome-wide linkage, whole-genome sequencing (WGS), Sanger sequencing, RT-PCR, and ToPO TA cloning analyses were performed.

resultsWe revealed a heterozygous G>A transition in the 14q23 locus, at position +1 of the intron 8 donor splice site of the spectrin beta, erythrocytic (SPTB) gene. This splice variant (SPTB c.1064+1G>A) was confirmed by Sanger sequencing and showed complete co-segregation with HS in the family. Further RT-PCR reactions and sequencing analysis indicated that the variant leads to the exclusion of exon 8 and subsequent frameshift in exon 9 and a premature stop codon in SPTB. Translation of the altered allele would lead to a truncation with a loss of all spectrin repeat domains in SPTB protein.

conclusionThis variant is novel and has not been found in any databases. We propose that this splice variant explains the spherocytosis phenotype observed in this large family.

Indexed as

RNA Splice SitesAdolescentAdultChildFemaleHeterozygoteHumansMaleMutationPedigreePhenotypeSpectrinSpherocytosis, HereditaryRNA Splice SitesSpectrinSPTB protein, humanDNA varianthereditary spherocytosissplicingSPTB

Identifiers

PMID33943044
PMCPMC8172196
OpenAlexW3158328685

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.