Evidence map›Paper›PMID 33941845›Full record

ArticleCommunications biology2021

Conformational distortion in a fibril-forming oligomer arrests alpha-Synuclein fibrillation and minimizes its toxic effects.

Ritobrita Chakraborty, Sandip Dey, Pallabi Sil, Simanta Sarani Paul, Dipita Bhattacharyya, Anirban Bhunia, Jayati Sengupta, Krishnananda Chattopadhyay

Abstract read
In one paragraph

Article in Communications biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Ritobrita ChakrabortyStructural Biology and Bioinformatics Division, CSIR-Indian Institute of Chemical Biology, Kolkata, India.ORCID http://orcid.org/0000-0003-4949-8316
Sandip DeyStructural Biology and Bioinformatics Division, CSIR-Indian Institute of Chemical Biology, Kolkata, India.
Pallabi SilDepartment of Physics, University of Alberta, Edmonton, AB, Canada.
Simanta Sarani PaulDepartment of Medicine, Centre for Prion and Protein folding disease, University of Alberta, Edmonton, AB, Canada.
Dipita BhattacharyyaDepartment of Biophysics, Bose Institute- Centenary Campus, P-1/12C.I.T. Scheme VII-M, Kolkata, India.
Anirban BhuniaDepartment of Biophysics, Bose Institute- Centenary Campus, P-1/12C.I.T. Scheme VII-M, Kolkata, India.
Jayati SenguptaStructural Biology and Bioinformatics Division, CSIR-Indian Institute of Chemical Biology, Kolkata, India. jayati@iicb.res.in.ORCID http://orcid.org/0000-0003-3614-6047
Krishnananda ChattopadhyayStructural Biology and Bioinformatics Division, CSIR-Indian Institute of Chemical Biology, Kolkata, India. krish@iicb.res.in.ORCID http://orcid.org/0000-0002-1449-8909

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The fibrillation pathway of alpha-Synuclein, the causative protein of Parkinson's disease, encompasses transient, heterogeneous oligomeric forms whose structural understanding and link to toxicity are not yet understood. We report that the addition of the physiologically-available small molecule heme at a sub-stoichiometric ratio to either monomeric or aggregated α-Syn, targets a His50 residue critical for fibril-formation and stabilizes the structurally-heterogeneous populations of aggregates into a minimally-toxic oligomeric state. Cryo-EM 3D reconstruction revealed a 'mace'-shaped structure of this monodisperse population of oligomers, which is comparable to a solid-state NMR Greek key-like motif (where the core residues are arranged in parallel in-register sheets with a Greek key topology at the C terminus) that forms the fundamental unit/kernel of protofilaments. Further structural analyses suggest that heme binding induces a distortion in the Greek key-like architecture of the mace oligomers, which impairs their further appending into protofilaments and fibrils. Additionally, our study reports a novel mechanism of prevention as well as reclamation of amyloid fibril formation by blocking an inter-protofilament His50 residue using a small molecule.

Indexed as

Protein Multimerizationalpha-SynucleinAmyloidHemeHumansNeuroblastomaProtein ConformationTumor Cells, Culturedalpha-SynucleinAmyloidHeme

Identifiers

PMID33941845
PMCPMC8093279

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.