Evidence map›Paper›PMID 33941780›Full record

ArticleNature communications2021

Population genomics provides insights into the evolution and adaptation to humans of the waterborne pathogen Mycobacterium kansasii.

Tao Luo, Peng Xu, Yangyi Zhang, Jessica L Porter, Marwan Ghanem, Qingyun Liu, Yuan Jiang, Jing Li, Qing Miao, Bijie Hu and 14 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 44 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 13 institutions in 5 countries.

Tao Luo *Department of Pathogen Biology, West China School of Basic Medical Sciences & Forensic Medicine, Sichuan University, Chengdu, China. taoluo@scu.edu.cn.ORCID http://orcid.org/0000-0002-2929-2233
Peng Xu *Shanghai Institute of Infectious Disease and Biosecurity, Key Laboratory of Medical Molecular Virology (MOE/NHC/CAMS), Shanghai Medical College and School of Basic Medical Sciences, Shanghai Public Health Clinical Center, Fudan University, Shanghai, China.
Yangyi ZhangDepartment of Tuberculosis Control, Shanghai Municipal Centre for Disease Control and Prevention, Shanghai, China.
Jessica L PorterDepartment of Microbiology and Immunology, Doherty Institute for Infection and Immunity, University of Melbourne, Melbourne, Vic, Australia.
Marwan GhanemDepartment of Microbiology and Immunology, McGill University and McGill International TB Centre, Montreal, Quebec, Canada.
Qingyun LiuShanghai Institute of Infectious Disease and Biosecurity, Key Laboratory of Medical Molecular Virology (MOE/NHC/CAMS), Shanghai Medical College and School of Basic Medical Sciences, Shanghai Public Health Clinical Center, Fudan University, Shanghai, China.ORCID http://orcid.org/0000-0002-2284-5050
Yuan JiangDepartment of Tuberculosis Control, Shanghai Municipal Centre for Disease Control and Prevention, Shanghai, China.ORCID http://orcid.org/0000-0003-1211-6812
Jing LiDepartment of Tuberculosis Control, Shanghai Municipal Centre for Disease Control and Prevention, Shanghai, China.
Qing MiaoDepartment of Infectious Diseases, Zhongshan Hospital, Fudan University, Shanghai, China.
Bijie HuDepartment of Infectious Diseases, Zhongshan Hospital, Fudan University, Shanghai, China.
Benjamin P HowdenDepartment of Microbiology and Immunology, Doherty Institute for Infection and Immunity, University of Melbourne, Melbourne, Vic, Australia.ORCID http://orcid.org/0000-0003-0237-1473
Janet A M FyfeVictorian Infectious Diseases Reference Laboratory, Doherty Institute for Infection and Immunity, Melbourne Health, Melbourne, Vic, Australia.
Maria GlobanVictorian Infectious Diseases Reference Laboratory, Doherty Institute for Infection and Immunity, Melbourne Health, Melbourne, Vic, Australia.
Wencong HeChinese Center for Disease Control and Prevention and Beijing Tuberculosis and Thoracic Tumor Research Institute, Beijing, China.
Ping HeChinese Center for Disease Control and Prevention and Beijing Tuberculosis and Thoracic Tumor Research Institute, Beijing, China.
Yiting WangChinese Center for Disease Control and Prevention and Beijing Tuberculosis and Thoracic Tumor Research Institute, Beijing, China.
Houming LiuDepartment of Clinical Laboratory, The Third People's Hospital of Shenzhen, Southern University of Science and Technology, Shenzhen, China.
Howard E TakiffUnité de Pathogenetique Integrée Mycobacterienne, Institut Pasteur, Paris, France.
Yanlin ZhaoChinese Center for Disease Control and Prevention and Beijing Tuberculosis and Thoracic Tumor Research Institute, Beijing, China. zhaoyl@chinacdc.cn.ORCID http://orcid.org/0000-0002-7890-4312
Xinchun ChenGuangdong Provincial Key Laboratory of Regional Immunity and Diseases, Department of Pathogen Biology, Shenzhen University School of Medicine, Shenzhen, China. chenxinchun@szu.edu.cn.ORCID http://orcid.org/0000-0002-2101-9013
Qichao PanDepartment of Tuberculosis Control, Shanghai Municipal Centre for Disease Control and Prevention, Shanghai, China. panqichao@scdc.sh.cn.ORCID http://orcid.org/0000-0002-6557-5986
Marcel A BehrDepartment of Microbiology and Immunology, McGill University and McGill International TB Centre, Montreal, Quebec, Canada. marcel.behr@mcgill.ca.ORCID http://orcid.org/0000-0003-0402-4467
Timothy P StinearDepartment of Microbiology and Immunology, Doherty Institute for Infection and Immunity, University of Melbourne, Melbourne, Vic, Australia. tstinear@unimelb.edu.au.ORCID http://orcid.org/0000-0003-0150-123X
Qian GaoShanghai Institute of Infectious Disease and Biosecurity, Key Laboratory of Medical Molecular Virology (MOE/NHC/CAMS), Shanghai Medical College and School of Basic Medical Sciences, Shanghai Public Health Clinical Center, Fudan University, Shanghai, China. qiangao@fudan.edu.cn.ORCID http://orcid.org/0000-0002-8489-3672
Shanghai Municipal Center For Disease Control Prevention · CNThe University of Melbourne · AUShanghai Medical College of Fudan University · CNSun Yat-sen University · CNVictorian Infectious Diseases Reference Laboratory · AUChinese Center For Disease Control and Prevention · CNInstitut Pasteur · FRMcGill University · CAMcGill University Health Centre · CAShanghai Public Health Clinical Center · CNShenzhen University · CNSouthern University of Science and Technology · CNZunyi Medical University · CN

Funding

CIHR FDN-148362
6 · The paper itself

Abstract

Mycobacterium kansasii can cause serious pulmonary disease. It belongs to a group of closely-related species of non-tuberculous mycobacteria known as the M. kansasii complex (MKC). Here, we report a population genomics analysis of 358 MKC isolates from worldwide water and clinical sources. We find that recombination, likely mediated by distributive conjugative transfer, has contributed to speciation and on-going diversification of the MKC. Our analyses support municipal water as a main source of MKC infections. Furthermore, nearly 80% of the MKC infections are due to closely-related M. kansasii strains, forming a main cluster that apparently originated in the 1900s and subsequently expanded globally. Bioinformatic analyses indicate that several genes involved in metabolism (e.g., maintenance of the methylcitrate cycle), ESX-I secretion, metal ion homeostasis and cell surface remodelling may have contributed to M. kansasii's success and its ongoing adaptation to the human host.

Indexed as

Drinking WaterEnergy MetabolismGenetics, PopulationGenetic VariationGenome, BacterialGenomicsHumansLung DiseasesMycobacterium Infections, NontuberculousMycobacterium kansasiiVirulenceWater MicrobiologyDrinking Water

Identifiers

PMID33941780
PMCPMC8093194
OpenAlexW3157930708

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.