Evidence map›Paper›PMID 33941608›Full record

ArticleJournal of the American Society of Nephrology : JASN2021

Medical Records-Based Genetic Studies of the Complement System.

Atlas Khan, Ning Shang, Lynn Petukhova, Jun Zhang, Yufeng Shen, Scott J Hebbring, Halima Moncrieffe, Leah C Kottyan, Bahram Namjou-Khales, Rachel Knevel and 11 more

Open access · greenAbstract read
In one paragraph

Article in Journal of the American Society of Nephrology : JASN, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.0field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 18 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. Article
  5. Review
  6. GWAS highlights the neuronal contribution to multiple sclerosis susceptibility.medRxiv : the preprint server for health sciences · 2024
    Article
  7. Article
  8. Article
  9. Article
  10. Biobanks Linked to Electronic Health Records Accelerate Genomic Discovery.Journal of the American Society of Nephrology : JASN · 2021
    Article
  11. Interrogating complement via medical records.Nature reviews. Nephrology · 2021
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

21 authors at 10 institutions in 3 countries.

Atlas KhanDivision of Nephrology, Department of Medicine, Vagelos College of Physicians and Surgeons, Columbia University, New York, New York.
Ning ShangDepartment of Biomedical Informatics, Vagelos College of Physicians and Surgeons, Columbia University, New York, New York.
Lynn PetukhovaDepartment of Dermatology, Vagelos College of Physicians and Surgeons, Columbia University, New York, New York.
Jun ZhangDivision of Nephrology, Department of Medicine, Vagelos College of Physicians and Surgeons, Columbia University, New York, New York.
Yufeng ShenDepartment of Systems Biology, Vagelos College of Physicians and Surgeons, Columbia University Medical Center, New York, New York.
Scott J HebbringCenter for Human Genetics, Marshfield Clinic Research Foundation, Marshfield, Wisconsin.
Halima MoncrieffeDepartment of Pediatrics, Center for Autoimmune Genomics and Etiology, Cincinnati Children's Hospital Medical Center, University of Cincinnati, Cincinnati, Ohio.
Leah C KottyanDepartment of Pediatrics, Center for Autoimmune Genomics and Etiology, Cincinnati Children's Hospital Medical Center, University of Cincinnati, Cincinnati, Ohio.
Bahram Namjou-KhalesDepartment of Pediatrics, Center for Autoimmune Genomics and Etiology, Cincinnati Children's Hospital Medical Center, University of Cincinnati, Cincinnati, Ohio.
Rachel KnevelDepartment of Rheumatology, Leiden University Medical Center, Leiden, The Netherlands.
Soumya RaychaudhuriCenter for Data Sciences, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts.
Elizabeth W KarlsonDivision of Rheumatology, Department of Medicine, Brigham and Women's Hospital, Boston, Massachusetts.
John B HarleyDepartment of Pediatrics, Center for Autoimmune Genomics and Etiology, Cincinnati Children's Hospital Medical Center, University of Cincinnati, Cincinnati, Ohio.
Ian B StanawayDepartment of Biomedical Informatics Medical Education, School of Medicine, University of Washington, Seattle, Washington.
David CrosslinDepartment of Biomedical Informatics Medical Education, School of Medicine, University of Washington, Seattle, Washington.
Joshua C DennyDepartment of Biomedical Informatics, Vanderbilt University, Nashville, Tennessee.
Mitchell S V ElkindDepartment of Neurology, Vagelos College of Physicians and Surgeons, Columbia University, New York, New York.
Ali G GharaviDivision of Nephrology, Department of Medicine, Vagelos College of Physicians and Surgeons, Columbia University, New York, New York.
George HripcsakDepartment of Biomedical Informatics, Vagelos College of Physicians and Surgeons, Columbia University, New York, New York.
Chunhua WengDepartment of Biomedical Informatics, Vagelos College of Physicians and Surgeons, Columbia University, New York, New York.
Krzysztof KirylukDivision of Nephrology, Department of Medicine, Vagelos College of Physicians and Surgeons, Columbia University, New York, New York.
Columbia University · USCincinnati Children's Hospital Medical Center · USUniversity of Cincinnati · USUniversity of Washington Medical Center · USBrigham and Women's Hospital · USCenter for Human Genetics · USColumbia University Irving Medical Center · USLeiden University Medical Center · NLVanderbilt University · USVersus Arthritis · GB

Funding

Technologies and Resources CoreU54MD007593 · NIMHD · MEHARRY MEDICAL COLLEGE · PI ADUNYAH, SAMUEL EVANS · 2012 to 2018
$24.7M
Genomic Basis of Susceptibility to COVID-19 Infection and its ComplicationsU01HG006379 · NHGRI · MAYO CLINIC ROCHESTER · PI Richard R. Sharp · 2011 to 2026
$16.5M
Finding Genomic Profiles of COVID-19 Phenotypes from the EHRU01HG008685 · NHGRI · BRIGHAM AND WOMEN'S HOSPITAL · PI ELIZABETH W KARLSON, Matthew S Lebo · 2015 to 2026
$13.6M
Variation, Function, and Disease Supplement ProgramU01HG008657 · NHGRI · UNIVERSITY OF WASHINGTON · PI David Russell Crosslin, Gail Pairitz Jarvik · 2015 to 2026
$13.4M
OMOP information model for eMERGE phenotypingU01HG008680 · NHGRI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Wendy K Chung, GEORGE M HRIPCSAK · 2015 to 2026
$13.3M
DNA Sequencing Support for the eMERGE NetworkU01HG008664 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI GIBBS, RICHARD A · 2015 to 2019
$10.9M
Global Alliance for Genomic Health (GA4GH)U01HG008676 · NHGRI · BRIGHAM AND WOMEN'S HOSPITAL · PI LENNON, NIALL JOHN, REHM, HEIDI L · 2015 to 2019
$8.6M
HLA GENE COMPLEMENTATION IN PRIMARY SJOGREN'S AND LUPUSR01AI024717 · NIAID · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI KOTTYAN, LEAH CLAIRE, WEIRAUCH, MATTHEW TYSON · 1987 to 2025
$7.8M
The Electronic Medical Records and Genomics (eMERGE) Network Phase III Coordinating Center (U01)U01HG008701 · NHGRI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI PETERSON, JOSEPH F. · 2015 to 2019
$7.1M
VGER, the Vanderbilt Genome-Electronic Records ProjectU01HG008672 · NHGRI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI DENNY, JOSHUA C., RODEN, DAN M · 2015 to 2019
$5.1M
The Future of Genomics Medicine in Patient Care: Contributions from CHOPU01HG008684 · NHGRI · CHILDREN'S HOSP OF PHILADELPHIA · PI HAKONARSON, HAKON · 2015 to 2019
$5.0M
OMOP information model for eMERGE phenotypingU01HG008679 · NHGRI · GEISINGER CLINIC · PI WILLIAMS, MARC S. · 2015 to 2019
$4.4M
NHGRI NIH HHS U01 HG006379NHGRI NIH HHS U01 HG008657NHGRI NIH HHS U01 HG008664NHGRI NIH HHS U01 HG008666NHGRI NIH HHS U01 HG008672NHGRI NIH HHS U01 HG008673NHGRI NIH HHS U01 HG008676NHGRI NIH HHS U01 HG008679NHGRI NIH HHS U01 HG008680NHGRI NIH HHS U01 HG008684NHGRI NIH HHS U01 HG008685NHGRI NIH HHS U01 HG008701NIAID NIH HHS R01 AI024717NIAMS NIH HHS K01 AR075111NIAMS NIH HHS L60 AR077958NIMHD NIH HHS U54 MD007593
6 · The paper itself

Abstract

backgroundGenetic variants in complement genes have been associated with a wide range of human disease states, but well-powered genetic association studies of complement activation have not been performed in large multiethnic cohorts.

methodsWe performed medical records-based genome-wide and phenome-wide association studies for plasma C3 and C4 levels among participants of the Electronic Medical Records and Genomics (eMERGE) network.

resultsIn a GWAS for C3 levels in 3949 individuals, we detected two genome-wide significant loci: chr.1q31.3 (CFH locus; rs3753396-A;

conclusionsWe discovered genetic determinants of plasma C3 and C4 levels using eMERGE genomic data linked to electronic medical records. Genetic variants regulating C3 and C4 levels have large effects and multiple clinical correlations across the spectrum of complement-related diseases in humans.

Indexed as

Genetic VariationMedical RecordsAdultAgedAllelesComplement ActivationComplement C3Complement C4Databases, GeneticEpidemiologic StudiesFemaleGene DosageGenetic LociGenome-Wide Association StudyHumansMaleComplement C3Complement C4autoimmunitycomplement systemelectronic health recordsgenome wide association studyphenome wide association study

Identifiers

PMID33941608
PMCPMC8455263
OpenAlexW3158782743

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.