Evidence map›Paper›PMID 33939800›Full record

ArticleNucleic acids research2021

Evolving origin-of-transfer sequences on staphylococcal conjugative and mobilizable plasmids-who's mimicking whom?

Karina Yui Eto, Stephen M Kwong, Patrick T LaBreck, Jade E Crow, Daouda A K Traore, Nipuna Parahitiyawa, Heather M Fairhurst, D Scott Merrell, Neville Firth, Charles S Bond and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
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  4. Article
  5. Article
  6. Article
  7. The Plasmidomic Landscape of Clinical Methicillin-ResistantAntibiotics (Basel, Switzerland) · 2023
    Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 5 countries.

Karina Yui EtoSchool of Molecular Sciences, University of Western Australia, Perth, WA 6009, Australia.
Stephen M KwongSchool of Life and Environmental Sciences, University of Sydney, Sydney, NSW 2006, Australia.
Patrick T LaBreckDepartment of Microbiology and Immunology, Uniformed Services University of the Health Sciences, Bethesda, Maryland, MD 20814, USA.
Jade E CrowCurtin Medical School, Curtin University, Perth, WA 6102, Australia.
Daouda A K TraoreDepartment of Biochemistry and Molecular Biology, Infection and Immunity Program, Monash Biomedicine Discovery Institute, Monash University, Clayton, VIC 3800, Australia.
Nipuna ParahitiyawaCurtin Medical School, Curtin University, Perth, WA 6102, Australia.
Heather M FairhurstCurtin Medical School, Curtin University, Perth, WA 6102, Australia.
D Scott MerrellDepartment of Microbiology and Immunology, Uniformed Services University of the Health Sciences, Bethesda, Maryland, MD 20814, USA.
Neville FirthSchool of Life and Environmental Sciences, University of Sydney, Sydney, NSW 2006, Australia.
Charles S BondSchool of Molecular Sciences, University of Western Australia, Perth, WA 6009, Australia.
Joshua P RamsayCurtin Health Innovation Research Institute, Curtin University, Perth, WA 6102, Australia.ORCID 0000-0002-1301-7077
Curtin University · AUThe University of Western Australia · AUThe University of Sydney · AUUniformed Services University of the Health Sciences · USAustralian Regenerative Medicine Institute · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In Staphylococcus aureus, most multiresistance plasmids lack conjugation or mobilization genes for horizontal transfer. However, most are mobilizable due to carriage of origin-of-transfer (oriT) sequences mimicking those of conjugative plasmids related to pWBG749. pWBG749-family plasmids have diverged to carry five distinct oriT subtypes and non-conjugative plasmids have been identified that contain mimics of each. The relaxasome accessory factor SmpO, encoded by each conjugative plasmid, determines specificity for its cognate oriT. Here we characterized the binding of SmpO proteins to each oriT. SmpO proteins predominantly formed tetramers in solution and bound 5'-GNNNNC-3' sites within each oriT. Four of the five SmpO proteins specifically bound their cognate oriT. An F7K substitution in pWBG749 SmpO switched oriT-binding specificity in vitro. In vivo, the F7K substitution reduced but did not abolish self-transfer of pWBG749. Notably, the substitution broadened the oriT subtypes that were mobilized. Thus, this substitution represents a potential evolutionary intermediate with promiscuous DNA-binding specificity that could facilitate a switch between oriT specificities. Phylogenetic analysis suggests pWBG749-family plasmids have switched oriT specificity more than once during evolution. We hypothesize the convergent evolution of oriT specificity in distinct branches of the pWBG749-family phylogeny reflects indirect selection pressure to mobilize plasmids carrying non-cognate oriT-mimics.

Indexed as

Amino Acid SubstitutionBacterial ProteinsBinding SitesConjugation, GeneticDNA FootprintingEvolution, MolecularPhylogenyPlasmidsStaphylococcus aureusBacterial Proteins

Identifiers

PMID33939800
PMCPMC8136818
OpenAlexW3158828577

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.