Evidence map›Paper›PMID 33939797›Full record

ArticleThe Journal of general physiology2021

Identification of PUFA interaction sites on the cardiac potassium channel KCNQ1.

Samira Yazdi, Johan Nikesjö, Williams Miranda, Valentina Corradi, D Peter Tieleman, Sergei Yu Noskov, H Peter Larsson, Sara I Liin

Open access · hybridAbstract read
In one paragraph

Article in The Journal of general physiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
2.8field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 45 citations in OpenAlex.

  1. Article
  2. Article
  3. KCNQ1 and PIPCell research · 2025
    Article
  4. Article
  5. Article
  6. Review
  7. Beneficial action potential duration-shortening effects, but deleterious negative inotropism of IKs-activator docosahexaenoyl glycine in long QT syndrome type 2.Europace : European pacing, arrhythmias, and cardiac electrophysiology : journal of the working groups on cardiac pacing, arrhythmias, and cardiac cellular electrophysiology of the European Society of Cardiology · 2025
    Article
  8. Article
  9. Structure of the human KNature structural & molecular biology · 2025
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Structure of the human KbioRxiv : the preprint server for biology · 2024
    Article
  18. Article
  19. Article
  20. Mechanistic insights into robust cardiac IbioRxiv : the preprint server for biology · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

Samira YazdiDepartment of Biomedical and Clinical Sciences, Linköping University, Linköping, Sweden.
Johan NikesjöDepartment of Biomedical and Clinical Sciences, Linköping University, Linköping, Sweden.
Williams MirandaCentre for Molecular Simulations, Department of Biological Sciences, University of Calgary, Calgary, AB, Canada.
Valentina CorradiCentre for Molecular Simulations, Department of Biological Sciences, University of Calgary, Calgary, AB, Canada.ORCID 0000-0001-6546-9780
D Peter TielemanCentre for Molecular Simulations, Department of Biological Sciences, University of Calgary, Calgary, AB, Canada.ORCID 0000-0001-5507-0688
Sergei Yu NoskovCentre for Molecular Simulations, Department of Biological Sciences, University of Calgary, Calgary, AB, Canada.ORCID 0000-0001-7769-335X
H Peter LarssonDepartment of Physiology and Biophysics, University of Miami, Miami, FL.ORCID 0000-0002-1688-2525
Sara I LiinDepartment of Biomedical and Clinical Sciences, Linköping University, Linköping, Sweden.ORCID 0000-0001-8493-0114
University of Calgary · CALinköping University · SEUniversity of Miami · US

Funding

Polyunsaturated fatty acids as anti-arrhythmic agents.R01HL131461 · NHLBI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI BARRO-SORIA, RENE, DYKXHOORN, DEREK MICHAEL · 2016 to 2024
$5.1M
Breakthrough Molecular Dynamics Research via an Anton2 SupercomputerR01GM116961 · NIGMS · CARNEGIE-MELLON UNIVERSITY · PI BLOOD, PHILIP D. · 2016 to 2023
$3.0M
CIHR FRN-CIHR: 156236NHLBI NIH HHS R01 HL131461NIGMS NIH HHS R01 GM116961
6 · The paper itself

Abstract

Polyunsaturated fatty acids (PUFAs), but not saturated fatty acids, modulate ion channels such as the cardiac KCNQ1 channel, although the mechanism is not completely understood. Using both simulations and experiments, we find that PUFAs interact directly with the KCNQ1 channel via two different binding sites: one at the voltage sensor and one at the pore. These two amphiphilic binding pockets stabilize the negatively charged PUFA head group by electrostatic interactions with R218, R221, and K316, while the hydrophobic PUFA tail is selectively stabilized by cassettes of hydrophobic residues. The rigid saturated tail of stearic acid prevents close contacts with KCNQ1. By contrast, the mobile tail of PUFA linoleic acid can be accommodated in the crevice of the hydrophobic cassette, a defining feature of PUFA selectivity in KCNQ1. In addition, we identify Y268 as a critical PUFA anchor point underlying fatty acid selectivity. Combined, this study provides molecular models of direct interactions between PUFAs and KCNQ1 and identifies selectivity mechanisms. Long term, this understanding may open new avenues for drug development based on PUFA mechanisms.

Indexed as

KCNQ1 Potassium ChannelPotassium Channels, Voltage-GatedAnimalsBinding SitesFatty Acids, UnsaturatedXenopus laevisFatty Acids, UnsaturatedKCNQ1 Potassium ChannelPotassium Channels, Voltage-Gated

Identifiers

PMID33939797
PMCPMC8097404
OpenAlexW3159405380

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.