Evidence map›Paper›PMID 33939422›Full record

ArticleJournal of medicinal chemistry2021

Discovery of Potent Coumarin-Based Kinetic Stabilizers of Amyloidogenic Immunoglobulin Light Chains Using Structure-Based Design.

Nicholas L Yan, Diogo Santos-Martins, Reji Nair, Alan Chu, Ian A Wilson, Kristen A Johnson, Stefano Forli, Gareth J Morgan, H Michael Petrassi, Jeffery W Kelly

Abstract read
In one paragraph

Article in Journal of medicinal chemistry, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Nicholas L YanDepartment of Chemistry, The Scripps Research Institute, La Jolla, California 92037, United States.
Diogo Santos-MartinsDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, California 92037, United States.
Reji NairDepartment of Chemistry, The Scripps Research Institute, La Jolla, California 92037, United States.ORCID 0000-0002-0234-7628
Alan ChuCalifornia Institute for Biomedical Research, 11119 North Torrey Pines Road, La Jolla, California 92037, United States.
Ian A WilsonDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, California 92037, United States.
Kristen A JohnsonCalifornia Institute for Biomedical Research, 11119 North Torrey Pines Road, La Jolla, California 92037, United States.
Stefano ForliDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, California 92037, United States.ORCID 0000-0002-5964-7111
Gareth J MorganSection of Hematology and Medical Oncology, Department of Medicine, Boston University School of Medicine, Boston, Massachusetts 02118, United States.
H Michael PetrassiCalifornia Institute for Biomedical Research, 11119 North Torrey Pines Road, La Jolla, California 92037, United States.
Jeffery W KellyDepartment of Chemistry, The Scripps Research Institute, La Jolla, California 92037, United States.ORCID 0000-0001-8943-3395

Funding

User Training and OutreachP30GM124169 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI PAUL David ADAMS, Gregory L Hura · 2017 to 2026
$28.6M
AutoDock Suite: Next Generation Environment for Drug DesignR01GM069832 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI FORLI, STEFANO · 2004 to 2025
$10.9M
Probing the Biochemical Mechanisms of Amyloid DiseaseR01DK046335 · NIDDK · SCRIPPS RESEARCH INSTITUTE, THE · PI KELLY, JEFFERY W · 1998 to 2025
$8.8M
Probing the biochemical mechanism of amyloid diseaseR37DK046335 · NIDDK · SCRIPPS RESEARCH INSTITUTE, THE · PI KELLY, JEFFERY W · 2006 to 2015
$5.9M
Probing the Proteinopathy Component of Light Chain Amyloidosis PharmacologicallyR01HL157566 · NHLBI · SCRIPPS RESEARCH INSTITUTE, THE · PI JEFFERY W KELLY · 2021 to 2026
$3.3M
High-Speed High-Sensitivity Detector for X-ray Micro-Crystallography at GM/CA@APSS10OD012289 · OD · UNIVERSITY OF CHICAGO · PI FISCHETTI, ROBERT F. · 2014 to 2014
$2.0M
Potent and specific small molecule stabilizers of amyloidogenic antibody light chainsF31HL154732 · NHLBI · SCRIPPS RESEARCH INSTITUTE, THE · PI YAN, NICHOLAS · 2020 to 2022
$66k
NHLBI NIH HHS F31 HL154732NHLBI NIH HHS R01 HL157566NIDDK NIH HHS R01 DK046335NIDDK NIH HHS R37 DK046335NIGMS NIH HHS P30 GM124169NIGMS NIH HHS R01 GM069832NIH HHS S10 OD012289
6 · The paper itself

Abstract

In immunoglobulin light-chain (LC) amyloidosis, transient unfolding or unfolding and proteolysis enable aggregation of LC proteins, causing potentially fatal organ damage. A drug that kinetically stabilizes LCs could suppress aggregation; however, LC sequences are variable and have no natural ligands, hindering drug development efforts. We previously identified high-throughput screening hits that bind to a site at the interface between the two variable domains of the LC homodimer. We hypothesized that extending the stabilizers beyond this initially characterized binding site would improve affinity. Here, using protease sensitivity assays, we identified stabilizers that can be divided into four substructures. Some stabilizers exhibit nanomolar EC

Indexed as

Drug DesignAmyloidCoumarinsCrystallography, X-RayHigh-Throughput Screening AssaysImmunoglobulin Light ChainsKineticsModels, MolecularProtein DomainsProtein StabilityAmyloidcoumarinCoumarinsImmunoglobulin Light Chains

Identifiers

PMID33939422
PMCPMC8428256

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.