Evidence map›Paper›PMID 33938878›Full record

ArticleJournal of visualized experiments : JoVE2021

High-Throughput Live Imaging of Microcolonies to Measure Heterogeneity in Growth and Gene Expression.

Federica M O Sartori, Cassandra Buzby, Yevgeniy Plavskin, Mark L Siegal

Abstract readVideo-Audio Media
In one paragraph

Article in Journal of visualized experiments : JoVE, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Exe-Muscle: An Exercised Human Skeletal Muscle Gene Expression Database.International journal of environmental research and public health · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Federica M O SartoriCenter for Genomics and Systems Biology, Department of Biology, New York University.
Cassandra BuzbyCenter for Genomics and Systems Biology, Department of Biology, New York University.
Yevgeniy PlavskinCenter for Genomics and Systems Biology, Department of Biology, New York University.
Mark L SiegalCenter for Genomics and Systems Biology, Department of Biology, New York University; mark.siegal@nyu.edu.

Funding

The Quantitative Biological Systems Training (QBIST) ProgramT32GM132037 · NIGMS · NEW YORK UNIVERSITY · PI David Gresham, Christine Vogel · 2019 to 2026
$2.3M
Genetic and Nongenetic Variation in Complex TraitsR35GM118170 · NIGMS · NEW YORK UNIVERSITY · PI SIEGAL, MARK L · 2016 to 2021
$1.7M
NIGMS NIH HHS R35 GM118170NIGMS NIH HHS T32 GM132037
6 · The paper itself

Abstract

Precise measurements of between- and within-strain heterogeneity in microbial growth rates are essential for understanding genetic and environmental inputs into stress tolerance, pathogenicity, and other key components of fitness. This manuscript describes a microscope-based assay that tracks approximately 10

Indexed as

Gene ExpressionImage Processing, Computer-AssistedMicroscopySaccharomyces cerevisiaeSoftware

Identifiers

PMID33938878
PMCPMC8142558

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.