Evidence map›Paper›PMID 33936414›Full record

ArticleAMIA ... Annual Symposium proceedings. AMIA Symposium2020

Extracting Angina Symptoms from Clinical Notes Using Pre-Trained Transformer Architectures.

Aaron S Eisman, Nishant R Shah, Carsten Eickhoff, George Zerveas, Elizabeth S Chen, Wen-Chih Wu, Indra Neil Sarkar

Open access · greenAbstract read
In one paragraph

Article in AMIA ... Annual Symposium proceedings. AMIA Symposium, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Learning health system linchpins: information exchange and a common data model.Journal of the American Medical Informatics Association : JAMIA · 2025
    Article
  2. Machine learning approaches for electronic health records phenotyping: a methodical review.Journal of the American Medical Informatics Association : JAMIA · 2023
    Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Aaron S EismanCenter for Biomedical Informatics, Brown University, Providence RI.
Nishant R ShahThe Warren Alpert Medical School, Brown University, Providence, RI.
Carsten EickhoffCenter for Biomedical Informatics, Brown University, Providence RI.
George ZerveasCenter for Biomedical Informatics, Brown University, Providence RI.
Elizabeth S ChenCenter for Biomedical Informatics, Brown University, Providence RI.
Wen-Chih WuThe Warren Alpert Medical School, Brown University, Providence, RI.
Indra Neil SarkarCenter for Biomedical Informatics, Brown University, Providence RI.
Brown University · USProvidence VA Medical Center · US

Funding

Tracking and Evaluation CoreU54GM115677 · NIGMS · BROWN UNIVERSITY · PI ROUNDS, SHARON IRENE SMITH · 2016 to 2025
$45.0M
Improving the Accuracy of ASCVD Risk Estimation Using Population-Level EHR and Genetic DataF30LM013320 · NLM · BROWN UNIVERSITY · PI EISMAN, AARON S · 2020 to 2023
$157k
AHRQ HHS K12 HS022998NIGMS NIH HHS U54 GM115677NLM NIH HHS F30 LM013320
6 · The paper itself

Abstract

Anginal symptoms can connote increased cardiac risk and a need for change in cardiovascular management. In this study, a pre-trained transformer architecture was used to automatically detect and characterize anginal symptoms from within the history of present illness sections of 459 primary care physician notes. Consecutive patients referred for cardiac testing were included. Notes were annotated for positive and negative mentions of chest pain and shortness of breath characterization. The results demonstrate high sensitivity and specificity for the detection of chest pain or discomfort, substernal chest pain, shortness of breath, and dyspnea on exertion. Model performance extracting factors related to provocation and palliation of chest pain were limited by small sample size. Overall, this study shows that pre-trained transformer architectures have promise in automating the extraction of anginal symptoms from clinical texts.

Indexed as

Data CollectionElectronic Health RecordsNatural Language ProcessingPhysicians, Primary CareAngina PectorisChest PainComputer SystemsDocumentationHumansMaleMiddle AgedPrimary Health Care

Identifiers

PMID33936414
PMCPMC8075440
OpenAlexW3092793259

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.