Evidence map›Paper›PMID 33934427›Full record

ReviewProtein science : a publication of the Protein Society2021

Step-by-step design of proteins for small molecule interaction: A review on recent milestones.

José M Pereira, Maria Vieira, Sérgio M Santos

Abstract readReview
In one paragraph

Review in Protein science : a publication of the Protein Society, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Petabase-Scale Homology Search for Structure Prediction.Cold Spring Harbor perspectives in biology · 2024
    Review
  2. Petascale Homology Search for Structure Prediction.bioRxiv : the preprint server for biology · 2023
    Article
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

José M PereiraCICECO & Departamento de Química, Universidade de Aveiro, Aveiro, Portugal.ORCID 0000-0001-5622-8010
Maria VieiraCICECO & Departamento de Química, Universidade de Aveiro, Aveiro, Portugal.
Sérgio M SantosCICECO & Departamento de Química, Universidade de Aveiro, Aveiro, Portugal.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Protein design is the field of synthetic biology that aims at developing de novo custom-made proteins and peptides for specific applications. Despite exploring an ambitious goal, recent computational advances in both hardware and software technologies have paved the way to high-throughput screening and detailed design of novel folds and improved functionalities. Modern advances in the field of protein design for small molecule targeting are described in this review, organized in a step-by-step fashion: from the conception of a new or upgraded active binding site, to scaffold design, sequence optimization, and experimental expression of the custom protein. In each step, contemporary examples are described, and state-of-the-art software is briefly explored.

Indexed as

Computational ChemistryProtein EngineeringProteinsSynthetic BiologyBinding SitesModels, MolecularSoftwareProteinscomputational chemistryde novo designprotein designprotein synthesis

Identifiers

PMID33934427
PMCPMC8284594

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.