Evidence map›Paper›PMID 33932238›Full record

ArticleThe EMBO journal2021

TFG binds LC3C to regulate ULK1 localization and autophagosome formation.

Marianna Carinci, Beatrice Testa, Matteo Bordi, Giacomo Milletti, Massimo Bonora, Laura Antonucci, Caterina Ferraina, Marta Carro, Mukesh Kumar, Donatella Ceglie and 19 more

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
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  7. TFG regulates secretory and endosomal sorting pathways in neurons to promote their activity and maintenance.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Autophagy in major human diseases.The EMBO journal · 2021
    Review
  13. Article
  14. TFG: a novel regulator of ULK1-dependent autophagy.Molecular & cellular oncology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors at 10 institutions in 4 countries.

Marianna CarinciDepartment of Pediatric Hemato-Oncology and Cell and Gene Therapy, IRCCS Bambino Gesù Children's Hospital, Rome, Italy.
Beatrice TestaDepartment of Biology, University of Rome Tor Vergata, Rome, Italy.
Matteo BordiDepartment of Pediatric Hemato-Oncology and Cell and Gene Therapy, IRCCS Bambino Gesù Children's Hospital, Rome, Italy.
Giacomo MillettiDepartment of Pediatric Hemato-Oncology and Cell and Gene Therapy, IRCCS Bambino Gesù Children's Hospital, Rome, Italy.
Massimo BonoraDepartment of Medical Sciences, University of Ferrara, Laboratory of Technologies for Advanced Therapy (LTTA), Technopole of Ferrara, Ferrara, Italy.
Laura AntonucciDepartment of Pediatric Hemato-Oncology and Cell and Gene Therapy, IRCCS Bambino Gesù Children's Hospital, Rome, Italy.
Caterina FerrainaDepartment of Pediatric Hemato-Oncology and Cell and Gene Therapy, IRCCS Bambino Gesù Children's Hospital, Rome, Italy.
Marta CarroDepartment of Biology, University of Padua, Padua, Italy.
Mukesh KumarComputational Biology Laboratory, Danish Cancer Society Research Center, Copenhagen, Denmark.ORCID 0000-0001-9052-3259
Donatella CeglieDepartment of Pediatric Hemato-Oncology and Cell and Gene Therapy, IRCCS Bambino Gesù Children's Hospital, Rome, Italy.
Franziska EckMunich Cluster for Systems Neurology (SyNergy), Ludwig-Maximilians-Universität (LMU), München, Germany.
Roberta NardacciDepartment of Epidemiology and Preclinical Research, National Institute for Infectious Diseases IRCCS "L. Spallanzani", Rome, Italy.
Francois le GuerrouéMunich Cluster for Systems Neurology (SyNergy), Ludwig-Maximilians-Universität (LMU), München, Germany.
Stefania PetriniConfocal Microscopy Core Facility, Research Laboratories, IRCCS Bambino Gesù Children's Hospital, Rome, Italy.
Maria E SorianoDepartment of Biology, University of Padua, Padua, Italy.
Ignazio CaruanaDepartment of Pediatric Hemato-Oncology and Cell and Gene Therapy, IRCCS Bambino Gesù Children's Hospital, Rome, Italy.ORCID 0000-0002-9250-0605
Valentina DoriaConfocal Microscopy Core Facility, Research Laboratories, IRCCS Bambino Gesù Children's Hospital, Rome, Italy.
Maria ManifavaThe Babraham Institute, Cambridge, UK.
Camille PeronUO Medical Genetics and Neurogenetics, Fondazione IRCCS Istituto Neurologico C. Besta, Milan, Italy.
Matteo LambrughiComputational Biology Laboratory, Danish Cancer Society Research Center, Copenhagen, Denmark.
Valeria TirantiUO Medical Genetics and Neurogenetics, Fondazione IRCCS Istituto Neurologico C. Besta, Milan, Italy.ORCID 0000-0002-3584-7338
Christian BehrendsMunich Cluster for Systems Neurology (SyNergy), Ludwig-Maximilians-Universität (LMU), München, Germany.ORCID 0000-0002-9184-7607
Elena PapaleoComputational Biology Laboratory, Danish Cancer Society Research Center, Copenhagen, Denmark.
Paolo PintonDepartment of Medical Sciences, University of Ferrara, Laboratory of Technologies for Advanced Therapy (LTTA), Technopole of Ferrara, Ferrara, Italy.ORCID 0000-0001-7108-6508
Carlotta GiorgiDepartment of Medical Sciences, University of Ferrara, Laboratory of Technologies for Advanced Therapy (LTTA), Technopole of Ferrara, Ferrara, Italy.
Nicholas T KtistakisThe Babraham Institute, Cambridge, UK.
Franco LocatelliDepartment of Pediatric Hemato-Oncology and Cell and Gene Therapy, IRCCS Bambino Gesù Children's Hospital, Rome, Italy.
Francesca Nazio *Department of Pediatric Hemato-Oncology and Cell and Gene Therapy, IRCCS Bambino Gesù Children's Hospital, Rome, Italy.ORCID 0000-0002-3039-4448
Francesco Cecconi *Department of Pediatric Hemato-Oncology and Cell and Gene Therapy, IRCCS Bambino Gesù Children's Hospital, Rome, Italy.ORCID 0000-0002-5614-4359
Bambino Gesù Children's Hospital · ITUniversity of Ferrara · ITUniversity of Rome Tor Vergata · ITMunich Cluster for Systems Neurology · DEBabraham Institute · GBDanish Cancer Society · DKFondazione IRCCS Istituto Neurologico Carlo Besta · ITUniversity of Padua · ITIstituto Nazionale per le Malattie Infettive Lazzaro Spallanzani · ITUniversity of Copenhagen · DK

Funding

Biotechnology and Biological Sciences Research Council BBS/E/B/000C0413Biotechnology and Biological Sciences Research Council BBS/E/B/000C0417
6 · The paper itself

Abstract

The early secretory pathway and autophagy are two essential and evolutionarily conserved endomembrane processes that are finely interlinked. Although growing evidence suggests that intracellular trafficking is important for autophagosome biogenesis, the molecular regulatory network involved is still not fully defined. In this study, we demonstrate a crucial effect of the COPII vesicle-related protein TFG (Trk-fused gene) on ULK1 puncta number and localization during autophagy induction. This, in turn, affects formation of the isolation membrane, as well as the correct dynamics of association between LC3B and early ATG proteins, leading to the proper formation of both omegasomes and autophagosomes. Consistently, fibroblasts derived from a hereditary spastic paraparesis (HSP) patient carrying mutated TFG (R106C) show defects in both autophagy and ULK1 puncta accumulation. In addition, we demonstrate that TFG activity in autophagy depends on its interaction with the ATG8 protein LC3C through a canonical LIR motif, thereby favouring LC3C-ULK1 binding. Altogether, our results uncover a link between TFG and autophagy and identify TFG as a molecular scaffold linking the early secretion pathway to autophagy.

Indexed as

AutophagosomesAutophagy-Related Protein-1 HomologBlotting, WesternFluorescent Antibody TechniqueHEK293 CellsHeLa CellsHumansImmunoprecipitationIntracellular Signaling Peptides and ProteinsMicroscopy, Electron, TransmissionMicrotubule-Associated ProteinsProteinsRNA InterferenceVesicular Transport ProteinsAutophagy-Related Protein-1 HomologIntracellular Signaling Peptides and ProteinsMAP1LC3C protein, humanMicrotubule-Associated ProteinsProteinsTFG protein, humanULK1 protein, humanVesicular Transport ProteinsautophagyERGICLC3CTFG

Identifiers

PMID33932238
PMCPMC8126910
OpenAlexW3157088991

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.