Evidence map›Paper›PMID 33931649›Full record

ArticleNature communications2021

A pan-cancer analysis of CpG Island gene regulation reveals extensive plasticity within Polycomb target genes.

Yueyuan Zheng, Guowei Huang, Tiago C Silva, Qian Yang, Yan-Yi Jiang, H Phillip Koeffler, De-Chen Lin, Benjamin P Berman

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 51 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. The Biological Characteristics and Differential Expression Patterns ofAnimals : an open access journal from MDPI · 2023
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 3 countries.

Yueyuan Zheng *Department of Medicine, Samuel Oschin Comprehensive Cancer Institute, Cedars-Sinai Medical Center, Los Angeles, CA, USA.ORCID http://orcid.org/0000-0002-5692-8903
Guowei Huang *Department of Medicine, Samuel Oschin Comprehensive Cancer Institute, Cedars-Sinai Medical Center, Los Angeles, CA, USA.
Tiago C SilvaCenter for Bioinformatics and Functional Genomics, Cedars-Sinai Medical Center, Los Angeles, CA, USA.
Qian YangDepartment of Medicine, Samuel Oschin Comprehensive Cancer Institute, Cedars-Sinai Medical Center, Los Angeles, CA, USA.
Yan-Yi JiangDepartment of Medicine, Samuel Oschin Comprehensive Cancer Institute, Cedars-Sinai Medical Center, Los Angeles, CA, USA.
H Phillip KoefflerDepartment of Medicine, Samuel Oschin Comprehensive Cancer Institute, Cedars-Sinai Medical Center, Los Angeles, CA, USA.ORCID http://orcid.org/0000-0001-5839-9913
De-Chen LinDepartment of Medicine, Samuel Oschin Comprehensive Cancer Institute, Cedars-Sinai Medical Center, Los Angeles, CA, USA. dchlin11@gmail.com.ORCID http://orcid.org/0000-0002-1951-367X
Benjamin P BermanDepartment of Developmental Biology and Cancer Research, Institute for Medical Research Israel-Canada, Hebrew University-Hadassah Medical School, Jerusalem, Israel. ben.berman@mail.huji.ac.il.ORCID http://orcid.org/0000-0002-2099-9005
Cedars-Sinai Medical Center · USHebrew University of Jerusalem · IL

Funding

Master regulator transcription factors promote esophageal neoplastic evolutionR37CA237022 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI LIN, DE-CHEN · 2020 to 2025
$2.7M
Integrative Cancer Epigenomic Data Analysis Center (ICE-DAC)U24CA210969 · NCI · VAN ANDEL RESEARCH INSTITUTE · PI LAIRD, PETER W · 2016 to 2020
$2.5M
Connecting Genomic Alterations in Liposarcomas with Drug Responses and Identification of New Therapeutic ApproachesR01CA200992 · NCI · CEDARS-SINAI MEDICAL CENTER · PI KOEFFLER, HAROLD PHILLIP · 2016 to 2020
$1.8M
NCI NIH HHS R01 CA200992NCI NIH HHS R37 CA237022NCI NIH HHS U24 CA210969
6 · The paper itself

Abstract

CpG Island promoter genes make up more than half of human genes, and a subset regulated by Polycomb-Repressive Complex 2 (PRC2

Indexed as

CpG IslandsBinding SitesCell Line, TumorChromatinChromatin Immunoprecipitation SequencingDatabases, GeneticDNA-Binding ProteinsDNA MethylationDown-RegulationEmbryonic Stem CellsEnhancer Elements, GeneticGene Expression ProfilingGene Expression Regulation, NeoplasticHepatocyte Nuclear Factor 4HistonesHumansChromatinDNA-Binding ProteinsHepatocyte Nuclear Factor 4histone H3 trimethyl Lys4HistonesHNF4A protein, humanPolycomb-Group Proteins

Identifiers

PMID33931649
PMCPMC8087678
OpenAlexW3157035634

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.