Evidence map›Paper›PMID 33931604›Full record

ArticleHorticulture research2021

Comparative transcriptome analyses shed light on carotenoid production and plastid development in melon fruit.

Noam Chayut, Hui Yuan, Yuval Saar, Yi Zheng, Tianhu Sun, Xuesong Zhou, Anna Hermanns, Elad Oren, Adi Faigenboim, Maixia Hui and 5 more

Open access · goldAbstract read
In one paragraph

Article in Horticulture research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.4field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 40 citations in OpenAlex.

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  10. Telomere-to-telomere carrot (Horticulture research · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 4 countries.

Noam ChayutDepartment of Vegetable Research, ARO, Newe Ya'ar Research Center, P.O. Box 1021, Ramat Yishay, 30095, Israel.
Hui YuanRobert W. Holley Center for Agriculture and Health, USDA-Agricultural Research Service, Cornell University, Ithaca, NY, 14853, USA.
Yuval SaarDepartment of Vegetable Research, ARO, Newe Ya'ar Research Center, P.O. Box 1021, Ramat Yishay, 30095, Israel.
Yi ZhengBoyce Thompson Institute, Ithaca, NY, 14853, USA.
Tianhu SunRobert W. Holley Center for Agriculture and Health, USDA-Agricultural Research Service, Cornell University, Ithaca, NY, 14853, USA.ORCID http://orcid.org/0000-0002-2513-1387
Xuesong ZhouRobert W. Holley Center for Agriculture and Health, USDA-Agricultural Research Service, Cornell University, Ithaca, NY, 14853, USA.
Anna HermannsRobert W. Holley Center for Agriculture and Health, USDA-Agricultural Research Service, Cornell University, Ithaca, NY, 14853, USA.
Elad OrenDepartment of Vegetable Research, ARO, Newe Ya'ar Research Center, P.O. Box 1021, Ramat Yishay, 30095, Israel.ORCID http://orcid.org/0000-0001-6821-4409
Adi FaigenboimDepartment of Vegetable Research, ARO, Newe Ya'ar Research Center, P.O. Box 1021, Ramat Yishay, 30095, Israel.
Maixia HuiRobert W. Holley Center for Agriculture and Health, USDA-Agricultural Research Service, Cornell University, Ithaca, NY, 14853, USA.
Zhangjun FeiRobert W. Holley Center for Agriculture and Health, USDA-Agricultural Research Service, Cornell University, Ithaca, NY, 14853, USA.ORCID http://orcid.org/0000-0001-9684-1450
Michael MazourekPlant Breeding and Genetics Section, School of Integrative Plant Science, Cornell University, Ithaca, NY, 14853, USA.
Joseph BurgerDepartment of Vegetable Research, ARO, Newe Ya'ar Research Center, P.O. Box 1021, Ramat Yishay, 30095, Israel.
Yaakov TadmorDepartment of Vegetable Research, ARO, Newe Ya'ar Research Center, P.O. Box 1021, Ramat Yishay, 30095, Israel. tadmory@agri.gov.il.
Li LiRobert W. Holley Center for Agriculture and Health, USDA-Agricultural Research Service, Cornell University, Ithaca, NY, 14853, USA. ll37@cornell.edu.ORCID http://orcid.org/0000-0002-4352-4061
Cornell University · USAgricultural Research Organization · ILJohn Innes Centre · GBNanjing Agricultural University · CN

Funding

United States Department of Agriculture | National Institute of Food and Agriculture (NIFA) 2019-67013-29162United States - Israel Binational Agricultural Research and Development Fund (BARD) US-4918-16CR
6 · The paper itself

Abstract

Carotenoids, such as β-carotene, accumulate in chromoplasts of various fleshy fruits, awarding them with colors, aromas, and nutrients. The Orange (CmOr) gene controls β-carotene accumulation in melon fruit by posttranslationally enhancing carotenogenesis and repressing β-carotene turnover in chromoplasts. Carotenoid isomerase (CRTISO) isomerizes yellow prolycopene into red lycopene, a prerequisite for further metabolism into β-carotene. We comparatively analyzed the developing fruit transcriptomes of orange-colored melon and its two isogenic EMS-induced mutants, low-β (Cmor) and yofi (Cmcrtiso). The Cmor mutation in low-β caused a major transcriptomic change in the mature fruit. In contrast, the Cmcrtiso mutation in yofi significantly changed the transcriptome only in early fruit developmental stages. These findings indicate that melon fruit transcriptome is primarily altered by changes in carotenoid metabolic flux and plastid conversion, but minimally by carotenoid composition in the ripe fruit. Clustering of the differentially expressed genes into functional groups revealed an association between fruit carotenoid metabolic flux with the maintenance of the photosynthetic apparatus in fruit chloroplasts. Moreover, large numbers of thylakoid localized photosynthetic genes were differentially expressed in low-β. CmOR family proteins were found to physically interact with light-harvesting chlorophyll a-b binding proteins, suggesting a new role of CmOR for chloroplast maintenance in melon fruit. This study brings more insights into the cellular and metabolic processes associated with fruit carotenoid accumulation in melon fruit and reveals a new maintenance mechanism of the photosynthetic apparatus for plastid development.

Identifiers

PMID33931604
PMCPMC8087762
OpenAlexW3159666183

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.