Evidence map›Paper›PMID 33929935›Full record

ArticleEmerging microbes & infections2021

Blood virosphere in febrile Tanzanian children.

Samuel Cordey, Florian Laubscher, Mary-Anne Hartley, Thomas Junier, Kristina Keitel, Mylène Docquier, Nicolas Guex, Christian Iseli, Gael Vieille, Philippe Le Mercier and 14 more

Open access · goldAbstract read
In one paragraph

Article in Emerging microbes & infections, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 1 pooled it
1.2field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 1 synthesis or guideline pooled it, 32 citations in OpenAlex.

  1. Pooled it
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  9. Review
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  14. Three Modes of Viral Adaption by the Heart.bioRxiv : the preprint server for biology · 2024
    Article
  15. Gemykibivirus detection in acute encephalitis patients from Nepal.medRxiv : the preprint server for health sciences · 2024
    Article
  16. Article
  17. Article
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  19. Article
  20. Expansion ofViruses · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 7 institutions in 3 countries.

Samuel CordeyDivision of Infectious Diseases, Geneva University Hospitals, Geneva, Switzerland.ORCID https://orcid.org/0000-0002-2684-5680
Florian LaubscherDivision of Infectious Diseases, Geneva University Hospitals, Geneva, Switzerland.
Mary-Anne HartleyCentre for Primary Care and Public Health (Unisanté), University of Lausanne, Lausanne, Switzerland.
Thomas JunierGlobal Health Institute, School of Life Sciences, EPFL, Lausanne, Switzerland.
Kristina KeitelSwiss Tropical and Public Health Institute, University of Basel, Basel, Switzerland.
Mylène DocquieriGE3 Genomics Platform, University of Geneva, Geneva, Switzerland.
Nicolas GuexBioinformatics Competence Center, University of Lausanne and EPFL, Lausanne, Switzerland.
Christian IseliBioinformatics Competence Center, University of Lausanne and EPFL, Lausanne, Switzerland.ORCID https://orcid.org/0000-0002-2296-2863
Gael VieilleDivision of Infectious Diseases, Geneva University Hospitals, Geneva, Switzerland.
Philippe Le MercierSwissProt group, SIB Swiss Institute of Bioinformatics, Geneva, Switzerland.
Anne GleizesSwissProt group, SIB Swiss Institute of Bioinformatics, Geneva, Switzerland.
Josephine SamakaIfakara Health Institute, Dar es Salaam, Tanzania.
Tarsis MlaganileIfakara Health Institute, Dar es Salaam, Tanzania.
Frank KagoroIfakara Health Institute, Dar es Salaam, Tanzania.
John MasimbaIfakara Health Institute, Dar es Salaam, Tanzania.
Zamzam SaidIfakara Health Institute, Dar es Salaam, Tanzania.
Hosiana TembaIfakara Health Institute, Dar es Salaam, Tanzania.
Gasser H ElbannaIntelligent Global Health, Machine Learning and Optimization Laboratory, EPFL, Lausanne, Switzerland.
Caroline TapparelDepartment of Microbiology and Molecular Medicine, University of Geneva Medical School, Geneva, Switzerland.
Marie-Celine ZanellaDivision of Infectious Diseases, Geneva University Hospitals, Geneva, Switzerland.
Ioannis XenariosHealth2030 Genome Center, Geneva, Switzerland.
Jacques FellayGlobal Health Institute, School of Life Sciences, EPFL, Lausanne, Switzerland.
Valérie D'AcremontCentre for Primary Care and Public Health (Unisanté), University of Lausanne, Lausanne, Switzerland.
Laurent KaiserDivision of Infectious Diseases, Geneva University Hospitals, Geneva, Switzerland.
University of Geneva · CHIfakara Health Institute · TZÉcole Polytechnique Fédérale de Lausanne · CHSIB Swiss Institute of Bioinformatics · CHSwiss Tropical and Public Health Institute · CHUniversity of Bern · CHUniversity of Lausanne · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Viral infections are the leading cause of childhood acute febrile illnesses motivating consultation in sub-Saharan Africa. The majority of causal viruses are never identified in low-resource clinical settings as such testing is either not part of routine screening or available diagnostic tools have limited ability to detect new/unexpected viral variants. An in-depth exploration of the blood virome is therefore necessary to clarify the potential viral origin of fever in children. Metagenomic next-generation sequencing is a powerful tool for such broad investigations, allowing the detection of RNA and DNA viral genomes. Here, we describe the blood virome of 816 febrile children (<5 years) presenting at outpatient departments in Dar es Salaam over one-year. We show that half of the patients (394/816) had at least one detected virus recognized as causes of human infection/disease (13.8% enteroviruses (enterovirus A, B, C, and rhinovirus A and C), 12% rotaviruses, 11% human herpesvirus type 6). Additionally, we report the detection of a large number of viruses (related to arthropod, vertebrate or mammalian viral species) not yet known to cause human infection/disease, highlighting those who should be on the radar, deserve specific attention in the febrile paediatric population and, more broadly, for surveillance of emerging pathogens.

Indexed as

Child, PreschoolFeverHigh-Throughput Nucleotide SequencingHumansInfantInfant, NewbornMetagenomicsRetrospective StudiesSequence Analysis, DNASequence Analysis, RNATanzaniaVirus DiseasesVirusesBlood viromechildrenfevermetagenomic next-generation sequencingvirosphere

Identifiers

PMID33929935
PMCPMC8171259
OpenAlexW3137062742

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.