Evidence map›Paper›PMID 33928256›Full record

ArticleRadiology. Artificial intelligence2020

Automated Assessment and Tracking of COVID-19 Pulmonary Disease Severity on Chest Radiographs using Convolutional Siamese Neural Networks.

Matthew D Li, Nishanth Thumbavanam Arun, Mishka Gidwani, Ken Chang, Francis Deng, Brent P Little, Dexter P Mendoza, Min Lang, Susanna I Lee, Aileen O'Shea and 3 more

Abstract read
In one paragraph

Article in Radiology. Artificial intelligence, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 75 papers.

0numbers the graph read from it
0cells of the map it votes in
75citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

75 citing papers in PubMed.

  1. Article
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  8. Automated Pulmonary Tuberculosis Severity Assessment on Chest X-rays.Journal of imaging informatics in medicine · 2024
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  11. Article
  12. Article
  13. Article
  14. Automatic Quantification of COVID-19 Pulmonary Edema by Self-supervised Contrastive Learning.Medical image learning with limited and noisy data : second international workshop, MILLanD 2023, held in conjunction with MICCAI 2023, Vancouver, BC, Canada, October 8, 2023, proceedings. MILLanD (Workshop) : (2nd : 2023 : Vancouver, B... · 2023
    Article
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15 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors.

Matthew D LiAthinoula A. Martinos Center for Biomedical Imaging (M.D.L., N.T.A., M.G., K.C., P.S., J.K.C.), Department of Radiology (F.D., M.L.), Division of Thoracic Imaging and Intervention (B.P.L, D.P.M.), Division of Abdominal Imaging (S.I.L., A.O., A.P.), and MGH and BWH Center for Clinical Data Science (J.K.) of the Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA.ORCID https://orcid.org/0000-0002-6207-4940
Nishanth Thumbavanam ArunAthinoula A. Martinos Center for Biomedical Imaging (M.D.L., N.T.A., M.G., K.C., P.S., J.K.C.), Department of Radiology (F.D., M.L.), Division of Thoracic Imaging and Intervention (B.P.L, D.P.M.), Division of Abdominal Imaging (S.I.L., A.O., A.P.), and MGH and BWH Center for Clinical Data Science (J.K.) of the Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA.
Mishka GidwaniAthinoula A. Martinos Center for Biomedical Imaging (M.D.L., N.T.A., M.G., K.C., P.S., J.K.C.), Department of Radiology (F.D., M.L.), Division of Thoracic Imaging and Intervention (B.P.L, D.P.M.), Division of Abdominal Imaging (S.I.L., A.O., A.P.), and MGH and BWH Center for Clinical Data Science (J.K.) of the Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA.ORCID https://orcid.org/0000-0002-8477-2539
Ken ChangAthinoula A. Martinos Center for Biomedical Imaging (M.D.L., N.T.A., M.G., K.C., P.S., J.K.C.), Department of Radiology (F.D., M.L.), Division of Thoracic Imaging and Intervention (B.P.L, D.P.M.), Division of Abdominal Imaging (S.I.L., A.O., A.P.), and MGH and BWH Center for Clinical Data Science (J.K.) of the Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA.ORCID https://orcid.org/0000-0001-6956-5059
Francis DengAthinoula A. Martinos Center for Biomedical Imaging (M.D.L., N.T.A., M.G., K.C., P.S., J.K.C.), Department of Radiology (F.D., M.L.), Division of Thoracic Imaging and Intervention (B.P.L, D.P.M.), Division of Abdominal Imaging (S.I.L., A.O., A.P.), and MGH and BWH Center for Clinical Data Science (J.K.) of the Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA.ORCID https://orcid.org/0000-0003-3117-5076
Brent P LittleAthinoula A. Martinos Center for Biomedical Imaging (M.D.L., N.T.A., M.G., K.C., P.S., J.K.C.), Department of Radiology (F.D., M.L.), Division of Thoracic Imaging and Intervention (B.P.L, D.P.M.), Division of Abdominal Imaging (S.I.L., A.O., A.P.), and MGH and BWH Center for Clinical Data Science (J.K.) of the Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA.ORCID https://orcid.org/0000-0001-6657-8241
Dexter P MendozaAthinoula A. Martinos Center for Biomedical Imaging (M.D.L., N.T.A., M.G., K.C., P.S., J.K.C.), Department of Radiology (F.D., M.L.), Division of Thoracic Imaging and Intervention (B.P.L, D.P.M.), Division of Abdominal Imaging (S.I.L., A.O., A.P.), and MGH and BWH Center for Clinical Data Science (J.K.) of the Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA.ORCID https://orcid.org/0000-0001-7571-740X
Min LangAthinoula A. Martinos Center for Biomedical Imaging (M.D.L., N.T.A., M.G., K.C., P.S., J.K.C.), Department of Radiology (F.D., M.L.), Division of Thoracic Imaging and Intervention (B.P.L, D.P.M.), Division of Abdominal Imaging (S.I.L., A.O., A.P.), and MGH and BWH Center for Clinical Data Science (J.K.) of the Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA.ORCID https://orcid.org/0000-0002-3895-5342
Susanna I LeeAthinoula A. Martinos Center for Biomedical Imaging (M.D.L., N.T.A., M.G., K.C., P.S., J.K.C.), Department of Radiology (F.D., M.L.), Division of Thoracic Imaging and Intervention (B.P.L, D.P.M.), Division of Abdominal Imaging (S.I.L., A.O., A.P.), and MGH and BWH Center for Clinical Data Science (J.K.) of the Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA.ORCID https://orcid.org/0000-0003-2195-2943
Aileen O'SheaAthinoula A. Martinos Center for Biomedical Imaging (M.D.L., N.T.A., M.G., K.C., P.S., J.K.C.), Department of Radiology (F.D., M.L.), Division of Thoracic Imaging and Intervention (B.P.L, D.P.M.), Division of Abdominal Imaging (S.I.L., A.O., A.P.), and MGH and BWH Center for Clinical Data Science (J.K.) of the Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA.ORCID https://orcid.org/0000-0002-2172-7087
Anushri ParakhAthinoula A. Martinos Center for Biomedical Imaging (M.D.L., N.T.A., M.G., K.C., P.S., J.K.C.), Department of Radiology (F.D., M.L.), Division of Thoracic Imaging and Intervention (B.P.L, D.P.M.), Division of Abdominal Imaging (S.I.L., A.O., A.P.), and MGH and BWH Center for Clinical Data Science (J.K.) of the Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA.ORCID https://orcid.org/0000-0002-4778-2383
Praveer SinghAthinoula A. Martinos Center for Biomedical Imaging (M.D.L., N.T.A., M.G., K.C., P.S., J.K.C.), Department of Radiology (F.D., M.L.), Division of Thoracic Imaging and Intervention (B.P.L, D.P.M.), Division of Abdominal Imaging (S.I.L., A.O., A.P.), and MGH and BWH Center for Clinical Data Science (J.K.) of the Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA.ORCID https://orcid.org/0000-0001-6641-2030
Jayashree Kalpathy-CramerAthinoula A. Martinos Center for Biomedical Imaging (M.D.L., N.T.A., M.G., K.C., P.S., J.K.C.), Department of Radiology (F.D., M.L.), Division of Thoracic Imaging and Intervention (B.P.L, D.P.M.), Division of Abdominal Imaging (S.I.L., A.O., A.P.), and MGH and BWH Center for Clinical Data Science (J.K.) of the Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA.ORCID https://orcid.org/0000-0001-8906-9618

Funding

Project 4P41EB015896 · NIBIB · MASSACHUSETTS GENERAL HOSPITAL · PI ROSEN, BRUCE R · 2012 to 2018
$9.8M
Quantitative Image Informatics for Cancer Research (QIICR)U24CA180918 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI FEDOROV, ANDRIY, KIKINIS, RON · 2013 to 2017
$4.0M
Informatics Tools for Optimized Imaging Biomarkers for Cancer Research&DiscoveryU24CA180927 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI KALPATHY-CRAMER, JAYASHREE, ROSEN, BRUCE R · 2014 to 2018
$3.4M
Quantitative MRI of Glioblastoma ResponseU01CA154601 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI KALPATHY-CRAMER, JAYASHREE · 2011 to 2016
$3.4M
Automatic Volumetric Treatment Response Assessment and Determination of Regional Genetic Characteristics in GlioblastomaF30CA239407 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI CHANG, KEN · 2019 to 2020
$101k
NCI NIH HHS F30 CA239407NCI NIH HHS U01 CA154601NCI NIH HHS U24 CA180918NCI NIH HHS U24 CA180927NIBIB NIH HHS P41 EB015896
6 · The paper itself

Abstract

purposeTo develop an automated measure of COVID-19 pulmonary disease severity on chest radiographs (CXRs), for longitudinal disease tracking and outcome prediction. MATERIALS AND

methodsA convolutional Siamese neural network-based algorithm was trained to output a measure of pulmonary disease severity on CXRs (pulmonary x-ray severity (PXS) score), using weakly-supervised pretraining on ∼160,000 anterior-posterior images from CheXpert and transfer learning on 314 frontal CXRs from COVID-19 patients. The algorithm was evaluated on internal and external test sets from different hospitals (154 and 113 CXRs respectively). PXS scores were correlated with radiographic severity scores independently assigned by two thoracic radiologists and one in-training radiologist (Pearson r). For 92 internal test set patients with follow-up CXRs, PXS score change was compared to radiologist assessments of change (Spearman ρ). The association between PXS score and subsequent intubation or death was assessed. Bootstrap 95% confidence intervals (CI) were calculated.

resultsPXS scores correlated with radiographic pulmonary disease severity scores assigned to CXRs in the internal and external test sets (r=0.86 (95%CI 0.80-0.90) and r=0.86 (95%CI 0.79-0.90) respectively). The direction of change in PXS score in follow-up CXRs agreed with radiologist assessment (ρ=0.74 (95%CI 0.63-0.81)). In patients not intubated on the admission CXR, the PXS score predicted subsequent intubation or death within three days of hospital admission (area under the receiver operating characteristic curve=0.80 (95%CI 0.75-0.85)).

conclusionA Siamese neural network-based severity score automatically measures radiographic COVID-19 pulmonary disease severity, which can be used to track disease change and predict subsequent intubation or death.

Identifiers

PMID33928256
PMCPMC7392327

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