Evidence map›Paper›PMID 33928242›Full record

ArticleNAR genomics and bioinformatics2021

Evolutionary genetic algorithm identifies

Matthew Alderdice, Stephanie G Craig, Matthew P Humphries, Alan Gilmore, Nicole Johnston, Victoria Bingham, Vicky Coyle, Seedevi Senevirathne, Daniel B Longley, Maurice B Loughrey and 5 more

Open access · goldAbstract read
In one paragraph

Article in NAR genomics and bioinformatics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.5field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
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  9. Machine-learning-based classification of diffuse large B-cell lymphoma patients by a 7-mRNA signature enriched with immune infiltration and cell cycle.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2024
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  14. A Review of Emerging Biomarkers for Immune Checkpoint Inhibitors in Tumors of the Gastrointestinal Tract.Medical science monitor : international medical journal of experimental and clinical research · 2022
    Review
  15. Article
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 1 institution in 1 country.

Matthew AlderdicePatrick G Johnston Centre for Cancer Research, Queen's University Belfast, BT9 7AE, Northern Ireland.
Stephanie G CraigPrecision Medicine Centre of Excellence, Patrick G Johnston Centre for Cancer Research, Queen's University Belfast, Belfast, BT9 7AE, Northern Ireland.
Matthew P HumphriesPrecision Medicine Centre of Excellence, Patrick G Johnston Centre for Cancer Research, Queen's University Belfast, Belfast, BT9 7AE, Northern Ireland.
Alan GilmorePatrick G Johnston Centre for Cancer Research, Queen's University Belfast, BT9 7AE, Northern Ireland.
Nicole JohnstonPatrick G Johnston Centre for Cancer Research, Queen's University Belfast, BT9 7AE, Northern Ireland.
Victoria BinghamPatrick G Johnston Centre for Cancer Research, Queen's University Belfast, BT9 7AE, Northern Ireland.
Vicky CoylePatrick G Johnston Centre for Cancer Research, Queen's University Belfast, BT9 7AE, Northern Ireland.
Seedevi SenevirathnePatrick G Johnston Centre for Cancer Research, Queen's University Belfast, BT9 7AE, Northern Ireland.
Daniel B LongleyPatrick G Johnston Centre for Cancer Research, Queen's University Belfast, BT9 7AE, Northern Ireland.
Maurice B LoughreyPatrick G Johnston Centre for Cancer Research, Queen's University Belfast, BT9 7AE, Northern Ireland.
Stephen McQuaidPatrick G Johnston Centre for Cancer Research, Queen's University Belfast, BT9 7AE, Northern Ireland.
Jacqueline A JamesPrecision Medicine Centre of Excellence, Patrick G Johnston Centre for Cancer Research, Queen's University Belfast, Belfast, BT9 7AE, Northern Ireland.
Manuel Salto-TellezPrecision Medicine Centre of Excellence, Patrick G Johnston Centre for Cancer Research, Queen's University Belfast, Belfast, BT9 7AE, Northern Ireland.
Mark LawlerPatrick G Johnston Centre for Cancer Research, Queen's University Belfast, BT9 7AE, Northern Ireland.
Darragh G McArtPatrick G Johnston Centre for Cancer Research, Queen's University Belfast, BT9 7AE, Northern Ireland.ORCID https://orcid.org/0000-0001-6426-8776
Queen's University Belfast · GB

Funding

Biotechnology and Biological Sciences Research Council BB/T002824/1Cancer Research UK 24387Medical Research Council G0400302Medical Research Council MC_PC_17117Medical Research Council MR/S003789/1Medical Research Council MR/S021205/1Wellcome Trust 110371/Z/15/Z
6 · The paper itself

Abstract

Identifying robust predictive biomarkers to stratify colorectal cancer (CRC) patients based on their response to immune-checkpoint therapy is an area of unmet clinical need. Our evolutionary algorithm Atlas Correlation Explorer (ACE) represents a novel approach for mining The Cancer Genome Atlas (TCGA) data for clinically relevant associations. We deployed ACE to identify candidate predictive biomarkers of response to immune-checkpoint therapy in CRC. We interrogated the colon adenocarcinoma (COAD) gene expression data across nine immune-checkpoints (

Identifiers

PMID33928242
PMCPMC8057496
OpenAlexW3152599068

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.