Evidence map›Paper›PMID 33928169›Full record

ArticleJournal of immunology research2021

Identification of SHMT2 as a Potential Prognostic Biomarker and Correlating with Immune Infiltrates in Lung Adenocarcinoma.

Lianxiang Luo, Yushi Zheng, Zhiping Lin, Xiaodi Li, Xiaoling Li, Mingyue Li, Liao Cui, Hui Luo

Open access · goldAbstract read
In one paragraph

Article in Journal of immunology research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 24 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Lianxiang LuoThe Marine Biomedical Research Institute, Guangdong Medical University, Zhanjiang 524023, China.ORCID https://orcid.org/0000-0002-3391-9713
Yushi ZhengThe First Clinical College, Guangdong Medical University, Zhanjiang 524023, China.
Zhiping LinThe Orthopedic Department, The Affiliated Hospital of Guangdong Medical University, Zhanjiang 524023, China.
Xiaodi LiThe First Clinical College, Guangdong Medical University, Zhanjiang 524023, China.
Xiaoling LiAnimal Experiment Center, Guangdong Medical University, Zhanjiang 524023, China.
Mingyue LiDepartment of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA19104, USA.
Liao CuiGuangdong Key Laboratory for Research and Development of Natural Drugs, Guangdong Medical University, Zhanjiang, Guangdong 524023, China.
Hui LuoThe Marine Biomedical Research Institute, Guangdong Medical University, Zhanjiang 524023, China.
Guangdong Medical College · CNUniversity of Pennsylvania · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

It has attracted growing attention that the role of serine hydroxy methyl transferase 2 (SHMT2) in various types of cancers. However, the prognostic role of SHMT2 in lung adenocarcinoma (LUAD) and its relationship with immune cell infiltration is not clear. In this study, the information of mRNA expression and clinic data in LUAD were, respectively, downloaded from the GEO and TCGA database. We conducted a biological analysis to select the signature gene SHMT2. Online databases including Oncomine, GEPIA, TISIDB, TIMER, and HPA were applied to analyze the characterization of SHMT2 expression, prognosis, and the correlation with immune infiltration in LUAD. The mRNA expression and protein expression of SHMT2 in LUAD tissues were higher than in normal tissue. A Kaplan-Meier analysis showed that patients with lower expression level of SHMT2 had a better overall survival rate. Multivariate analysis and the Cox proportional hazard regression model revealed that SHMT2 expression was an independent prognostic factor in patients with LUAD. Meanwhile, the gene SHMT2 was highly associated with tumor-infiltrating lymphocytes in LUAD. These results suggest that the SHMT2 gene is a promising candidate as a potential prognostic biomarker and highly associated with different types of immune cell infiltration in LUAD.

Indexed as

AdenocarcinomaBiomarkers, TumorComputational BiologyDatabases, FactualGene Expression Regulation, NeoplasticGlycine HydroxymethyltransferaseHumansLungLung NeoplasmsLymphocytes, Tumor-InfiltratingPrognosisRegression AnalysisSurvival AnalysisTranscriptomeBiomarkers, TumorGlycine HydroxymethyltransferaseSHMT protein, human

Identifiers

PMID33928169
PMCPMC8049788
OpenAlexW3111568933

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.