Evidence map›Paper›PMID 33927312›Full record

ArticleScientific reports2021

Transcriptomic phases of periodontitis lesions using the nonhuman primate model.

Jeffrey L Ebersole, Radhakrishnan Nagarajan, Sreenatha Kirakodu, Octavio A Gonzalez

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 22 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Jeffrey L EbersoleDepartment of Biomedical Sciences, School of Dental Medicine, B221, University of Nevada Las Vegas, 1001 Shadow Lane, Las Vegas, NV, 89106, USA. Jeffrey.ebersole@unlv.edu.
Radhakrishnan NagarajanCenter for Oral and Systemic Disease, Marshfield Research Foundation, Marshfield, WI, USA.
Sreenatha KirakoduCenter for Oral Health Research College of Dentistry, University of Kentucky, Lexington, KY, USA.
Octavio A GonzalezCenter for Oral Health Research College of Dentistry, University of Kentucky, Lexington, KY, USA.
University of Kentucky · USMarshfield Clinic · USUniversity of Nevada, Las Vegas · US

Funding

Translational Research at the CPRC:genetic model of primate circadian disorderP40RR003640 · NCRR · UNIVERSITY OF PUERTO RICO MED SCIENCES · PI KRAISELBURD, EDMUNDO NELSON · 1987 to 2011
$21.1M
UKY DENTAL COBRE: POLYBACTERIAL PERIODONTITIS: N-3 PUFA AND ANTIOXIDANTSP20RR020145 · NCRR · UNIVERSITY OF KENTUCKY · PI EBERSOLE, JEFFREY L · 2004 to 2011
$18.3M
Center for the Biologic Basis of Oral/Systemic Disease (CBBOSD)P20GM103538 · NIGMS · UNIVERSITY OF KENTUCKY · PI EBERSOLE, JEFFREY L · 2012 to 2013
$4.2M
NCRR NIH HHS P20 RR020145NCRR NIH HHS P40 RR003640NIGMS NIH HHS P20 GM103538NIH HHS GM103538/RR020145NIH HHS RR03640
6 · The paper itself

Abstract

We used a nonhuman primate model of ligature-induced periodontitis to identify patterns of gingival transcriptomic after changes demarcating phases of periodontitis lesions (initiation, progression, resolution). A total of 18 adult Macaca mulatta (12-22 years) had ligatures placed (premolar, 1st molar teeth) in all 4 quadrants. Gingival tissue samples were obtained (baseline, 2 weeks, 1 and 3 months during periodontitis and at 5 months resolution). Gene expression was analyzed by microarray [Rhesus Gene 1.0 ST Array (Affymetrix)]. Compared to baseline, a large array of genes were significantly altered at initiation (n = 6049), early progression (n = 4893), and late progression (n = 5078) of disease, with the preponderance being up-regulated. Additionally, 1918 genes were altered in expression with disease resolution, skewed towards down-regulation. Assessment of the genes demonstrated specific profiles of epithelial, bone/connective tissue, apoptosis/autophagy, metabolism, regulatory, immune, and inflammatory responses that were related to health, stages of disease, and tissues with resolved lesions. Unique transcriptomic profiles occured during the kinetics of the periodontitis lesion exacerbation and remission. We delineated phase specific gene expression profiles of the disease lesion. Detection of these gene products in gingival crevicular fluid samples from human disease may contribute to a better understanding of the biological dynamics of the disease to improve patient management.

Indexed as

TranscriptomeAnimalsDisease Models, AnimalDisease ProgressionGene Expression RegulationGingivaGingival Crevicular FluidHumansMacaca mulattaPeriodontitis

Identifiers

PMID33927312
PMCPMC8085193
OpenAlexW3127620550

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.