Evidence map›Paper›PMID 33926954›Full record

ArticleScience (New York, N.Y.)2021

A widespread pathway for substitution of adenine by diaminopurine in phage genomes.

Yan Zhou, Xuexia Xu, Yifeng Wei, Yu Cheng, Yu Guo, Ivan Khudyakov, Fuli Liu, Ping He, Zhangyue Song, Zhi Li and 5 more

Abstract read
PubMed Publisher
In one paragraph

Article in Science (New York, N.Y.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
14.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 96 citations in OpenAlex.

  1. Article
  2. Article
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  4. Article
  5. MACRO-MOLECULAR CROWDING FAVORS WRITHE IN UNWOUND DNA.bioRxiv : the preprint server for biology · 2026
    Article
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  9. Article
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  14. Review
  15. Isolation and Characterization of a Novel Phage againstInternational journal of molecular sciences · 2024
    Article
  16. Article
  17. Diaminopurine in Nonenzymatic RNA Template Copying.Journal of the American Chemical Society · 2024
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 4 countries.

Yan Zhou *Tianjin Key Laboratory for Modern Drug Delivery and High-Efficiency, Collaborative Innovation Center of Chemical Science and Engineering, School of Pharmaceutical Science and Technology, Tianjin University, Tianjin 300072, China.ORCID https://orcid.org/0000-0001-8867-4859
Xuexia Xu *iHuman Institute, ShanghaiTech University, Shanghai 201210, China.ORCID https://orcid.org/0000-0002-7413-2589
Yifeng Wei *Singapore Institute of Food and Biotechnology Innovation, Agency for Science, Technology and Research (A*STAR), Singapore.ORCID https://orcid.org/0000-0001-9124-0381
Yu ChengiHuman Institute, ShanghaiTech University, Shanghai 201210, China.ORCID https://orcid.org/0000-0003-1378-7757
Yu GuoiHuman Institute, ShanghaiTech University, Shanghai 201210, China.
Ivan KhudyakovAll-Russian Research Institute for Agricultural Microbiology, St. Petersburg 196608, Russia.ORCID https://orcid.org/0000-0003-3507-3739
Fuli LiuDepartment of Medical Microbiology and Immunology, Shanghai Jiao Tong University School of Medicine, Shanghai 200025, China.
Ping HeDepartment of Medical Microbiology and Immunology, Shanghai Jiao Tong University School of Medicine, Shanghai 200025, China.ORCID https://orcid.org/0000-0002-8005-8119
Zhangyue SongBiomedical Big Data Platform, SIAIS, ShanghaiTech University, Shanghai 201210, China.
Zhi LiTianjin Key Laboratory for Modern Drug Delivery and High-Efficiency, Collaborative Innovation Center of Chemical Science and Engineering, School of Pharmaceutical Science and Technology, Tianjin University, Tianjin 300072, China.ORCID https://orcid.org/0000-0001-6268-0679
Yan GaoTianjin Key Laboratory for Modern Drug Delivery and High-Efficiency, Collaborative Innovation Center of Chemical Science and Engineering, School of Pharmaceutical Science and Technology, Tianjin University, Tianjin 300072, China.ORCID https://orcid.org/0000-0001-9406-0538
Ee Lui AngSingapore Institute of Food and Biotechnology Innovation, Agency for Science, Technology and Research (A*STAR), Singapore.ORCID https://orcid.org/0000-0002-3070-8056
Huimin ZhaoSingapore Institute of Food and Biotechnology Innovation, Agency for Science, Technology and Research (A*STAR), Singapore. zhao5@illinois.edu yan.zhang@tju.edu.cn zhaosw@shanghaitech.edu.cn.ORCID https://orcid.org/0000-0002-9069-6739
Yan ZhangTianjin Key Laboratory for Modern Drug Delivery and High-Efficiency, Collaborative Innovation Center of Chemical Science and Engineering, School of Pharmaceutical Science and Technology, Tianjin University, Tianjin 300072, China. zhao5@illinois.edu yan.zhang@tju.edu.cn zhaosw@shanghaitech.edu.cn.ORCID https://orcid.org/0000-0003-2031-0631
Suwen ZhaoiHuman Institute, ShanghaiTech University, Shanghai 201210, China. zhao5@illinois.edu yan.zhang@tju.edu.cn zhaosw@shanghaitech.edu.cn.ORCID https://orcid.org/0000-0001-5609-434X
ShanghaiTech University · CNTianjin University · CNAgency for Science, Technology and Research · SGShanghai Jiao Tong University · CNAll-Russian Research Institute of Agricultural Microbiology · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

DNA modifications vary in form and function but generally do not alter Watson-Crick base pairing. Diaminopurine (Z) is an exception because it completely replaces adenine and forms three hydrogen bonds with thymine in cyanophage S-2L genomic DNA. However, the biosynthesis, prevalence, and importance of Z genomes remain unexplored. Here, we report a multienzyme system that supports Z-genome synthesis. We identified dozens of globally widespread phages harboring such enzymes, and we further verified the Z genome in one of these phages,

Indexed as

2-AminopurineAdenylosuccinate LyaseAdenylosuccinate SynthaseBacteriophagesBase PairingBiosynthetic PathwaysDNA, ViralDNA, Z-FormGenome, ViralHydrogen BondingProtein DomainsSubstrate SpecificityThymineViral Nonstructural Proteins2-AminopurineAdenylosuccinate LyaseAdenylosuccinate SynthaseDNA, ViralDNA, Z-FormThymineViral Nonstructural Proteins

Identifiers

PMID33926954
OpenAlexW3157715625

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.