Evidence map›Paper›PMID 33925986›Full record

ArticlePathogens (Basel, Switzerland)2021

Comparative Analysis of Full Genome Sequences of African Swine Fever Virus Isolates Taken from Wild Boars in Russia in 2019.

Ali Mazloum, Antoinette van Schalkwyk, Andrey Shotin, Alexey Igolkin, Ivan Shevchenko, Konstantin N Gruzdev, Natalia Vlasova

Open access · goldAbstract read
In one paragraph

Article in Pathogens (Basel, Switzerland), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
7.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 35 citations in OpenAlex.

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  18. Viruses · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Ali MazloumReference Laboratory for African Swine Fever Virus, FGBI "Federal Centre for Animal Health" (FGBI "ARRIAH"), 600901 Vladimir, Russia.ORCID 0000-0002-5982-8393
Antoinette van SchalkwykAgricultural Research Council-Onderstepoort Veterinary Institute, 100 Old Soutpan Road, Onderstepoort 0110, South Africa.ORCID 0000-0003-4761-8767
Andrey ShotinReference Laboratory for African Swine Fever Virus, FGBI "Federal Centre for Animal Health" (FGBI "ARRIAH"), 600901 Vladimir, Russia.ORCID 0000-0001-9884-1841
Alexey IgolkinReference Laboratory for African Swine Fever Virus, FGBI "Federal Centre for Animal Health" (FGBI "ARRIAH"), 600901 Vladimir, Russia.
Ivan ShevchenkoReference Laboratory for African Swine Fever Virus, FGBI "Federal Centre for Animal Health" (FGBI "ARRIAH"), 600901 Vladimir, Russia.
Konstantin N GruzdevReference Laboratory for African Swine Fever Virus, FGBI "Federal Centre for Animal Health" (FGBI "ARRIAH"), 600901 Vladimir, Russia.
Natalia VlasovaReference Laboratory for African Swine Fever Virus, FGBI "Federal Centre for Animal Health" (FGBI "ARRIAH"), 600901 Vladimir, Russia.
All-Russian Research Institute for Animal Health · RUOnderstepoort Veterinary Institute · ZA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In this study, we report on the full genome phylogenetic analysis of four ASFV isolates obtained from wild boars in Russia. These samples originated from two eastern and two western regions of Russia in 2019. Phylogenetic analysis indicated that the isolates were assigned to genotype II and grouped according to their geographical origins. The two eastern isolates shared 99.99% sequence identity with isolates from China, Poland, Belgium, and Moldova, whereas the western isolates had 99.98% sequence identity with isolates from Lithuania and the original Georgia 2007 isolate. Based on the full genome phylogenies, we identified three single locus targets, MGF-360-10L, MGF-505-9R, and I267L, that yielded the same resolving power as the full genomes. The ease of alignment and a high level of variation make these targets a suitable selection as additional molecular markers in future ASFV phylogenetic practices.

Indexed as

African swine fever virusfull-genome sequencegenome markersphylogenetic analysisRussian isolates

Identifiers

PMID33925986
PMCPMC8146468
OpenAlexW3158246265

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.