Evidence map›Paper›PMID 33925480›Full record

ArticleInternational journal of molecular sciences2021

NUP-98 Rearrangements Led to the Identification of Candidate Biomarkers for Primary Induction Failure in Pediatric Acute Myeloid Leukemia.

Vincenza Barresi, Virginia Di Bella, Nellina Andriano, Anna Provvidenza Privitera, Paola Bonaccorso, Manuela La Rosa, Valeria Iachelli, Giorgia Spampinato, Giulio Pulvirenti, Chiara Scuderi and 2 more

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Upregulation of SPINK2 in acute myeloid leukemia.Advances in laboratory medicine · 2023
    Review
  10. Molecular Mechanisms and Therapies of Myeloid Leukaemia.International journal of molecular sciences · 2022
    Article
  11. Review
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Vincenza BarresiDepartment of Biomedical and Biotechnological Sciences, Section of Medical Biochemistry, University of Catania, 95123 Catania, Italy.ORCID 0000-0003-1183-6981
Virginia Di BellaDepartment of Biomedical and Biotechnological Sciences, Section of Medical Biochemistry, University of Catania, 95123 Catania, Italy.ORCID 0000-0003-1624-8361
Nellina AndrianoCytogenetic-Cytofluorimetric-Molecular Biology Lab, 95123 Catania, Italy.
Anna Provvidenza PriviteraDepartment of Biomedical and Biotechnological Sciences, Section of Medical Biochemistry, University of Catania, 95123 Catania, Italy.ORCID 0000-0003-0705-9622
Paola BonaccorsoCytogenetic-Cytofluorimetric-Molecular Biology Lab, 95123 Catania, Italy.
Manuela La RosaCytogenetic-Cytofluorimetric-Molecular Biology Lab, 95123 Catania, Italy.
Valeria IachelliCytogenetic-Cytofluorimetric-Molecular Biology Lab, 95123 Catania, Italy.
Giorgia SpampinatoDepartment of Biomedical and Biotechnological Sciences, Section of Medical Biochemistry, University of Catania, 95123 Catania, Italy.
Giulio PulvirentiCytogenetic-Cytofluorimetric-Molecular Biology Lab, 95123 Catania, Italy.
Chiara ScuderiDepartment of Biomedical and Biotechnological Sciences, Section of Medical Biochemistry, University of Catania, 95123 Catania, Italy.ORCID 0000-0003-0539-8858
Daniele F CondorelliDepartment of Biomedical and Biotechnological Sciences, Section of Medical Biochemistry, University of Catania, 95123 Catania, Italy.ORCID 0000-0002-0311-5386
Luca Lo NigroCytogenetic-Cytofluorimetric-Molecular Biology Lab, 95123 Catania, Italy.ORCID 0000-0002-2480-1799
Policlinico Universitario di Catania · ITUniversity of Catania · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Conventional chemotherapy for acute myeloid leukemia regimens generally encompass an intensive induction phase, in order to achieve a morphological remission in terms of bone marrow blasts (<5%). The majority of cases are classified as Primary Induction Response (PIR); unfortunately, 15% of children do not achieve remission and are defined Primary Induction Failure (PIF). This study aims to characterize the gene expression profile of PIF in children with Acute Myeloid Leukemia (AML), in order to detect molecular pathways dysfunctions and identify potential biomarkers. Given that NUP98-rearrangements are enriched in PIF-AML patients, we investigated the association of NUP98-driven genes in primary chemoresistance. Therefore, 85 expression arrays, deposited on GEO database, and 358 RNAseq AML samples, from TARGET program, were analyzed for "Differentially Expressed Genes" (DEGs) between NUP98+ and NUP98-, identifying 110 highly confident NUP98/PIF-associated DEGs. We confirmed, by qRT-PCR, the overexpression of nine DEGs, selected on the bases of the diagnostic accuracy, in a local cohort of PIF patients:

Indexed as

AdolescentBiomarkers, TumorChildChild, PreschoolCohort StudiesCyclin-Dependent Kinase 6FemaleGene Expression Regulation, LeukemicGene RearrangementHistone-Lysine N-MethyltransferaseHumansInfantInfant, NewbornLeukemia, Myeloid, AcuteMaleMultigene FamilyBiomarkers, TumorCDK6 protein, humanCyclin-Dependent Kinase 6Histone-Lysine N-MethyltransferaseNSD1 protein, humanNuclear Pore Complex ProteinsNup98 protein, humanacute myeloid leukemiachemotherapy resistancedysregulated genesNUP98-rearrangementsomics technologiestranscriptome profile

Identifiers

PMID33925480
PMCPMC8123909
OpenAlexW3159296723

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.