Evidence map›Paper›PMID 33925231›Full record

ArticleInternational journal of molecular sciences2021

Developing a Riboswitch-Mediated Regulatory System for Metabolic Flux Control in Thermophilic

Marta Irla, Sigrid Hakvåg, Trygve Brautaset

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
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  3. Article
  4. Article
  5. Article
  6. Regulatory RNAs inSynthetic and systems biotechnology · 2024
    Review
  7. Article
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  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Marta IrlaDepartment of Biotechnology and Food Sciences, Norwegian University of Science and Technology, 7003 Trondheim, Norway.ORCID 0000-0001-7097-6656
Sigrid HakvågDepartment of Biotechnology and Food Sciences, Norwegian University of Science and Technology, 7003 Trondheim, Norway.ORCID 0000-0003-3287-2412
Trygve BrautasetDepartment of Biotechnology and Food Sciences, Norwegian University of Science and Technology, 7003 Trondheim, Norway.
Norwegian University of Science and Technology · NO

Funding

Norges Forskningsråd 285794 ERA-NET
6 · The paper itself

Abstract

Genome-wide transcriptomic data obtained in RNA-seq experiments can serve as a reliable source for identification of novel regulatory elements such as riboswitches and promoters. Riboswitches are parts of the 5' untranslated region of mRNA molecules that can specifically bind various metabolites and control gene expression. For that reason, they have become an attractive tool for engineering biological systems, especially for the regulation of metabolic fluxes in industrial microorganisms. Promoters in the genomes of prokaryotes are located upstream of transcription start sites and their sequences are easily identifiable based on the primary transcriptome data.

Indexed as

BacillusBacterial ProteinsComputational BiologyGenetic EngineeringGenome, BacterialMetabolic Flux AnalysisPromoter Regions, GeneticRegulatory Sequences, Nucleic AcidRiboswitchTranscription Initiation SiteTranscriptomeBacterial ProteinsRiboswitchBacillus methanolicuslysine riboswitchmethanolpbuE riboswitchthermophile

Identifiers

PMID33925231
PMCPMC8124236
OpenAlexW3157999583

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.