Evidence map›Paper›PMID 33924516›Full record

ReviewInternational journal of molecular sciences2021

Microscopic Methods for Identification of Sulfate-Reducing Bacteria from Various Habitats.

Ivan Kushkevych, Blanka Hýžová, Monika Vítězová, Simon K-M R Rittmann

Open access · goldAbstract readReview
In one paragraph

Review in International journal of molecular sciences, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 56 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Ivan KushkevychDepartment of Experimental Biology, Faculty of Science, Masaryk University, 62500 Brno, Czech Republic.ORCID 0000-0002-8450-7137
Blanka HýžováDepartment of Experimental Biology, Faculty of Science, Masaryk University, 62500 Brno, Czech Republic.
Monika VítězováDepartment of Experimental Biology, Faculty of Science, Masaryk University, 62500 Brno, Czech Republic.ORCID 0000-0002-0999-7957
Simon K-M R RittmannArchaea Physiology & Biotechnology Group, Department of Functional and Evolutionary Ecology, Universität Wien, 1090 Wien, Austria.ORCID 0000-0002-9746-3284
Masaryk University · CZUniversity of Vienna · AT

Funding

Masarykova Univerzita MUNI/A/1425/2020
6 · The paper itself

Abstract

This paper is devoted to microscopic methods for the identification of sulfate-reducing bacteria (SRB). In this context, it describes various habitats, morphology and techniques used for the detection and identification of this very heterogeneous group of anaerobic microorganisms. SRB are present in almost every habitat on Earth, including freshwater and marine water, soils, sediments or animals. In the oil, water and gas industries, they can cause considerable economic losses due to their hydrogen sulfide production; in periodontal lesions and the colon of humans, they can cause health complications. Although the role of these bacteria in inflammatory bowel diseases is not entirely known yet, their presence is increased in patients and produced hydrogen sulfide has a cytotoxic effect. For these reasons, methods for the detection of these microorganisms were described. Apart from selected molecular techniques, including metagenomics, fluorescence microscopy was one of the applied methods. Especially fluorescence in situ hybridization (FISH) in various modifications was described. This method enables visual identification of SRB, determining their abundance and spatial distribution in environmental biofilms and gut samples.

Indexed as

EcosystemAnimalsBacteriaHumansMetagenomicsMicroscopyOxidation-ReductionSulfatesSulfatesanaerobic microorganismsDAPIDesulfovibrioFISHfluorescence microscopygut microbiotahabitatsIBDidentificationmicroscopySRBSRMSRPsulfate reduction

Identifiers

PMID33924516
PMCPMC8069399
OpenAlexW3153290966

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.