Evidence map›Paper›PMID 33924042›Full record

ArticleInternational journal of molecular sciences2021

smartPARE: An R Package for Efficient Identification of True mRNA Cleavage Sites.

Kristian Persson Hodén, Xinyi Hu, German Martinez, Christina Dixelius

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. AFrontiers in plant science · 2026
    Article
  2. Review
  3. Prediction of miRNA Targets in Plants.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  4. Progress of the "Molecular Informatics" Section in 2022.International journal of molecular sciences · 2023
    Article
  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Kristian Persson HodénThe Swedish University of Agricultural Sciences, Department of Plant Biology, Uppsala BioCenter, Linnean Center for Plant Biology, P.O. Box 7080, S-75007 Uppsala, Sweden.ORCID 0000-0003-0354-0662
Xinyi HuThe Swedish University of Agricultural Sciences, Department of Plant Biology, Uppsala BioCenter, Linnean Center for Plant Biology, P.O. Box 7080, S-75007 Uppsala, Sweden.
German MartinezThe Swedish University of Agricultural Sciences, Department of Plant Biology, Uppsala BioCenter, Linnean Center for Plant Biology, P.O. Box 7080, S-75007 Uppsala, Sweden.
Christina DixeliusThe Swedish University of Agricultural Sciences, Department of Plant Biology, Uppsala BioCenter, Linnean Center for Plant Biology, P.O. Box 7080, S-75007 Uppsala, Sweden.ORCID 0000-0003-0150-0608

Funding

Swedish Research Council VR 2015-04259Wallenberg Foundation KAW 2019.0062
6 · The paper itself

Abstract

Degradome sequencing is commonly used to generate high-throughput information on mRNA cleavage sites mediated by small RNAs (sRNA). In our datasets of potato (

Indexed as

Host-Pathogen InteractionsPhytophthora infestansPlant DiseasesRNA, MessengerSolanum tuberosumRNA, Messengercleavage sitesPhytophthora infestanspotatosmall RNASolanum tuberosum

Identifiers

PMID33924042
PMCPMC8073297

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.