Evidence map›Paper›PMID 33923150›Full record

ArticleInternational journal of molecular sciences2021

Enriched-GWAS and Transcriptome Analysis to Refine and Characterize a Major QTL for Anaerobic Germination Tolerance in Rice.

Hedia Tnani, Dmytro Chebotarov, Ranjita Thapa, John Carlos I Ignacio, Walter K Israel, Fergie A Quilloy, Shalabh Dixit, Endang M Septiningsih, Tobias Kretzschmar

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Genomic landscape of theFrontiers in plant science · 2023
    Article
  7. Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Hedia TnaniInternational Rice Research Institute, DAPO Box 7777, Metro Manila 1301, Philippines.ORCID 0000-0002-0380-9740
Dmytro ChebotarovInternational Rice Research Institute, DAPO Box 7777, Metro Manila 1301, Philippines.ORCID 0000-0003-1351-9453
Ranjita ThapaDepartment of Soil and Crop Sciences, Texas A&M University, College Station, TX 77843, USA.
John Carlos I IgnacioInternational Rice Research Institute, DAPO Box 7777, Metro Manila 1301, Philippines.ORCID 0000-0002-1799-7316
Walter K IsraelInternational Rice Research Institute, DAPO Box 7777, Metro Manila 1301, Philippines.
Fergie A QuilloyInternational Rice Research Institute, DAPO Box 7777, Metro Manila 1301, Philippines.
Shalabh DixitInternational Rice Research Institute, DAPO Box 7777, Metro Manila 1301, Philippines.
Endang M SeptiningsihDepartment of Soil and Crop Sciences, Texas A&M University, College Station, TX 77843, USA.ORCID 0000-0002-9481-304X
Tobias KretzschmarSouthern Cross Plant Sciences, Southern Cross University, 1 Military Road, Lismore 2480, Australia.

Funding

German Federal Ministry of Economic Cooperation and Development (BMZ) 81157485
6 · The paper itself

Abstract

Tolerance of anaerobic germination (AG) is a key trait in the development of direct seeded rice. Through rapid and sustained coleoptile elongation, AG tolerance enables robust seedling establishment under flooded conditions. Previous attempts to fine map and characterize

Indexed as

Genome-Wide Association StudyGerminationPolymorphism, Single NucleotideQuantitative Trait LociAnaerobiosisChromosome MappingChromosomes, PlantGene Expression ProfilingOryzaPlant ProteinsPlant ProteinsAG2anaerobic germinationcandidate genesenriched haplotype GWASrice (Oryza sativa)transcriptomics

Identifiers

PMID33923150
PMCPMC8123023

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.