Evidence map›Paper›PMID 33922604›Full record

ArticleViruses2021

Molecular Detection and Characterization of Porcine Epidemic Diarrhea Virus and Porcine Aichivirus C Coinfection in México.

Montserrat-Elemi García-Hernández, María-Elena Trujillo-Ortega, Sofía-Lizbeth Alcaraz-Estrada, Luis Lozano-Aguirre-Beltrán, Carlos Sandoval-Jaime, Blanca Itzel Taboada-Ramírez, Rosa-Elena Sarmiento-Silva

Abstract read
In one paragraph

Article in Viruses, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 1 synthesis or guideline pooled it.

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  16. Viral Coinfections.Viruses · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Montserrat-Elemi García-HernándezDepartamento de Microbiología e Inmunología, Facultad de Medicina Veterinaria y Zootecnia, Universidad Nacional Autónoma de México, Ciudad Universitaria, Av. Universidad #3000, Ciudad de México 04510, Mexico.ORCID 0000-0001-6205-4176
María-Elena Trujillo-OrtegaDepartamento de Medicina y Zootecnia de Cerdos, Facultad de Medicina Veterinaria y Zootecnia, Universidad Nacional Autónoma de México, Ciudad Universitaria, Av. Universidad #3000, Ciudad de México 04510, Mexico.
Sofía-Lizbeth Alcaraz-EstradaDivisión de Medicina Genómica y Genética Clínica, Centro Médico Nacional "20 de Noviembre", Instituto de Seguridad y Servicios Sociales de los Trabajadores del Estado, Av. Félix Cuevas #540, Ciudad de México 03100, Mexico.
Luis Lozano-Aguirre-BeltránCentro de Ciencias Genómicas, Universidad Nacional Autónoma de México, Av. Universidad 2001, Cuernavaca 62209, Mexico.
Carlos Sandoval-JaimeInstituto de Biotecnología, Universidad Nacional Autónoma de México, Av. Universidad 2001, Cuernavaca 62209, Mexico.ORCID 0000-0001-6649-9180
Blanca Itzel Taboada-RamírezInstituto de Biotecnología, Universidad Nacional Autónoma de México, Av. Universidad 2001, Cuernavaca 62209, Mexico.ORCID 0000-0003-1896-5962
Rosa-Elena Sarmiento-SilvaDepartamento de Microbiología e Inmunología, Facultad de Medicina Veterinaria y Zootecnia, Universidad Nacional Autónoma de México, Ciudad Universitaria, Av. Universidad #3000, Ciudad de México 04510, Mexico.ORCID 0000-0001-7430-5657

Funding

Consejo Nacional de Ciencia y Tecnología 594843Universidad Nacional Autónoma de México IN221228
6 · The paper itself

Abstract

Swine enteric viral infections are responsible for substantial economic losses in the pork industry worldwide. Porcine epidemic diarrhea (PEDV) is one of the main causative agents of diarrhea in lactating pigs, and reports of PEDV coinfection with other enteric viruses highlight the importance of viral interactions for disease presentation and outcomes. Using next-generation sequencing (NGS) and sequence analyses from samples taken from piglets with acute diarrhea, we explored the possible interactions between PEDV and other less reported pathogens. PEDV coinfection with porcine kobuvirus (PKV) was detected in 36.4% (27/74) of samples. Full genomes from porcine coronavirus and kobuvirus were obtained, as was a partial porcine sapovirus genome (PSaV). The phylogenetic results show the clustering of these strains corresponding to the geographical relationship. To our knowledge, this is the first full genome and isolation report for porcine kobuvirus in México, as well as the first phylogenetic analysis for porcine sapovirus in the country. The NGS approach provides a better perspective of circulating viruses and other pathogens in affected production units.

Indexed as

AnimalsCoinfectionCoronavirus InfectionsDiarrheaFecesGenome, ViralKobuvirusMexicoMolecular Diagnostic TechniquesPhylogenyPorcine epidemic diarrhea virusSapovirusSequence AnalysisSwineSwine Diseasescoinfectionkobuvirusporcine diarrhea

Identifiers

PMID33922604
PMCPMC8146670

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.