Evidence map›Paper›PMID 33922593›Full record

ArticleViruses2021

Genetic Diversity of

Issiaka Bagayoko, Marcos Giovanni Celli, Gustavo Romay, Nils Poulicard, Agnès Pinel-Galzi, Charlotte Julian, Denis Filloux, Philippe Roumagnac, Drissa Sérémé, Claude Bragard and 1 more

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 4 countries.

Issiaka BagayokoEarth and Life Institute, Applied Microbiology-Phytopathology, Université Catholique de Louvain (UCLouvain), Croix du Sud 2 Bte L07.05.03, 1348 Louvain-la-Neuve, Belgium.
Marcos Giovanni CelliConsejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Buenos Aires 1425, Argentina.
Gustavo RomayEarth and Life Institute, Applied Microbiology-Phytopathology, Université Catholique de Louvain (UCLouvain), Croix du Sud 2 Bte L07.05.03, 1348 Louvain-la-Neuve, Belgium.
Nils PoulicardPHIM, Plant Health Institute, Université de Montpellier, IRD, INRAE, CIRAD, SupAgro, 911 Avenue Agropolis, 34394 Montpellier, France.ORCID 0000-0003-3969-2131
Agnès Pinel-GalziPHIM, Plant Health Institute, Université de Montpellier, IRD, INRAE, CIRAD, SupAgro, 911 Avenue Agropolis, 34394 Montpellier, France.
Charlotte JulianPHIM, Plant Health Institute, Université de Montpellier, IRD, INRAE, CIRAD, SupAgro, 911 Avenue Agropolis, 34394 Montpellier, France.
Denis FillouxPHIM, Plant Health Institute, Université de Montpellier, IRD, INRAE, CIRAD, SupAgro, 911 Avenue Agropolis, 34394 Montpellier, France.
Philippe RoumagnacPHIM, Plant Health Institute, Université de Montpellier, IRD, INRAE, CIRAD, SupAgro, 911 Avenue Agropolis, 34394 Montpellier, France.ORCID 0000-0001-5002-6039
Drissa SéréméLaboratoire de Laboratoire de Virologie et de Biotechnologies Végétales, INERA-Institut de l'Environnement et de Recherches Agricoles, LMI Patho-Bios, Ouagadougou 01 BP 476, Burkina Faso.ORCID 0000-0002-2439-5735
Claude BragardEarth and Life Institute, Applied Microbiology-Phytopathology, Université Catholique de Louvain (UCLouvain), Croix du Sud 2 Bte L07.05.03, 1348 Louvain-la-Neuve, Belgium.ORCID 0000-0003-3169-1716
Eugénie HébrardPHIM, Plant Health Institute, Université de Montpellier, IRD, INRAE, CIRAD, SupAgro, 911 Avenue Agropolis, 34394 Montpellier, France.ORCID 0000-0002-2128-1302
Centre de Coopération Internationale en Recherche Agronomique pour le Développement · FRUCLouvain · BEConsejo Nacional de Investigaciones Científicas y Técnicas · ARInstitut de l'Environnement et Recherches Agricoles · BF

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The rice stripe necrosis virus (RSNV) has been reported to infect rice in several countries in Africa and South America, but limited genomic data are currently publicly available. Here, eleven RSNV genomes were entirely sequenced, including the first corpus of RSNV genomes of African isolates. The genetic variability was differently distributed along the two genomic segments. The segment RNA1, within which clusters of polymorphisms were identified, showed a higher nucleotidic variability than did the beet necrotic yellow vein virus (BNYVV) RNA1 segment. The diversity patterns of both viruses were similar in the RNA2 segment, except for an in-frame insertion of 243 nucleotides located in the RSNV tgbp1 gene. Recombination events were detected into RNA1 and RNA2 segments, in particular in the two most divergent RSNV isolates from Colombia and Sierra Leone. In contrast to BNYVV, the RSNV molecular diversity had a geographical structure with two main RSNV lineages distributed in America and in Africa. Our data on the genetic diversity of RSNV revealed unexpected differences with BNYVV suggesting a complex evolutionary history of the genus

Indexed as

Evolution, MolecularGenetic VariationGenome, ViralPhylogenyPolymorphism, GeneticRNA, ViralTenuivirusRNA, ViralbenyvirusdiversityrecombinationRSNV

Identifiers

PMID33922593
PMCPMC8145960
OpenAlexW3159203271

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.