Evidence map›Paper›PMID 33919777›Full record

ArticlePlants (Basel, Switzerland)2021

Proteomic Identification and Meta-Analysis in

Ashwil Klein, Lizex H H Husselmann, Achmat Williams, Liam Bell, Bret Cooper, Brent Ragar, David L Tabb

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Plants (Basel, Switzerland), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.3field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 2 countries.

Ashwil KleinDepartment of Biotechnology, University of the Western Cape, Bellville 7535, South Africa.ORCID 0000-0002-5606-886X
Lizex H H HusselmannDepartment of Biotechnology, University of the Western Cape, Bellville 7535, South Africa.ORCID 0000-0002-5286-667X
Achmat WilliamsDepartment of Biotechnology, University of the Western Cape, Bellville 7535, South Africa.
Liam BellCentre for Proteomic and Genomic Research, Cape Town 7925, South Africa.ORCID 0000-0001-7791-7472
Bret CooperUSDA Agricultural Research Service, Beltsville, MD 20705, USA.ORCID 0000-0003-4915-2200
Brent RagarDepartments of Internal Medicine and Pediatrics, Massachusetts General Hospital, Harvard Medical School, Boston, MA 02150, USA.
David L TabbDepartment of Biotechnology, University of the Western Cape, Bellville 7535, South Africa.ORCID 0000-0001-7223-578X
University of the Western Cape · ZAAfrican Organisation for Research and Training in Cancer · ZAAgricultural Research Service · USHarvard University · USStellenbosch University · ZA

Funding

Department of Science and Innovation, South Africa 107023Department of Science and Innovation, South Africa 115280
6 · The paper itself

Abstract

While proteomics has demonstrated its value for model organisms and for organisms with mature genome sequence annotations, proteomics has been of less value in nonmodel organisms that are unaccompanied by genome sequence annotations. This project sought to determine the value of RNA-Seq experiments as a basis for establishing a set of protein sequences to represent a nonmodel organism, in this case, the pseudocereal chia. Assembling four publicly available chia RNA-Seq datasets produced transcript sequence sets with a high BUSCO completeness, though the number of transcript sequences and Trinity "genes" varied considerably among them. After six-frame translation, ProteinOrtho detected substantial numbers of orthologs among other species within the taxonomic order

Indexed as

bioinformaticsLC-MS/MSnonmodel organismsproteogenomicsproteomicsRNA-SeqSalvia columbariaeSalvia hispanica

Identifiers

PMID33919777
PMCPMC8070742
OpenAlexW3154080162

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.