Evidence map›Paper›PMID 33914527›Full record

ArticleJournal of the American Society for Mass Spectrometry2021

Improved Protein and PTM Characterization with a Practical Electron-Based Fragmentation on Q-TOF Instruments.

Joseph S Beckman, Valery G Voinov, Michael Hare, Derrill Sturgeon, Yury Vasil'ev, Diana Oppenheimer, Jared B Shaw, Shuai Wu, Rebecca Glaskin, Christian Klein and 2 more

Abstract read
In one paragraph

Article in Journal of the American Society for Mass Spectrometry, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Top-Down and Middle-Down Mass Spectrometry of Antibodies.Molecular & cellular proteomics : MCP · 2025
    Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. A Conformation-Specific Approach to Native Top-down Mass Spectrometry.Journal of the American Society for Mass Spectrometry · 2024
    Article
  11. Article
  12. To 200,000ACS central science · 2024
    Article
  13. Review
  14. Review
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Joseph S Beckmane-MSion, Inc, Corvallis, Oregon 97330, United States.ORCID http://orcid.org/0000-0003-1855-4653
Valery G Voinove-MSion, Inc, Corvallis, Oregon 97330, United States.
Michael Haree-MSion, Inc, Corvallis, Oregon 97330, United States.
Derrill Sturgeone-MSion, Inc, Corvallis, Oregon 97330, United States.
Yury Vasil'eve-MSion, Inc, Corvallis, Oregon 97330, United States.
Diana Oppenheimere-MSion, Inc, Corvallis, Oregon 97330, United States.
Jared B Shawe-MSion, Inc, Corvallis, Oregon 97330, United States.
Shuai WuAgilent Technologies, Inc Santa Clara, California 95051, United States.
Rebecca GlaskinAgilent Technologies, Inc Santa Clara, California 95051, United States.
Christian KleinAgilent Technologies, Inc Santa Clara, California 95051, United States.
Cody SchwarzerAgilent Technologies, Inc Santa Clara, California 95051, United States.
George StaffordAgilent Technologies, Inc Santa Clara, California 95051, United States.

Funding

Practical Mass Spectrometry Upgrade for Identifying Fragile Protein Modifications by ECDR44GM122131 · NIGMS · E-MSION, INC. · PI VOINOV, VALERY G. · 2017 to 2018
$1.8M
Enabling electron-induced fragmentation in tandem mass spectrometryR44GM123855 · NIGMS · E-MSION, INC. · PI VOINOV, VALERY G. · 2018 to 2019
$1.5M
Practical Mass Spectrometry Upgrade for Identifying Fragile Protein Modifications by ECDR43GM122131 · NIGMS · E-MSION, INC. · PI VOINOV, VALERY G. · 2017 to 2017
$225k
Enabling electron-induced fragmentation in tandem mass spectrometryR43GM123855 · NIGMS · E-MSION, INC. · PI VOINOV, VALERY G. · 2017 to 2017
$225k
NIGMS NIH HHS R43 GM122131NIGMS NIH HHS R43 GM123855NIGMS NIH HHS R44 GM122131NIGMS NIH HHS R44 GM123855
6 · The paper itself

Abstract

Electron-based dissociation (ExD) produces uncluttered mass spectra of intact proteins while preserving labile post-translational modifications. However, technical challenges have limited this option to only a few high-end mass spectrometers. We have developed an efficient ExD cell that can be retrofitted in less than an hour into current LC/Q-TOF instruments. Supporting software has been developed to acquire, process, and annotate peptide and protein ExD fragmentation spectra. In addition to producing complementary fragmentation, ExD spectra enable many isobaric leucine/isoleucine and isoaspartate/aspartate pairs to be distinguished by side-chain fragmentation. The ExD cell preserves phosphorylation and glycosylation modifications. It also fragments longer peptides more efficiently to reveal signaling cross-talk between multiple post-translational modifications on the same protein chain and cleaves disulfide bonds in cystine knotted proteins and intact antibodies. The ability of the ExD cell to combine collisional activation with electron fragmentation enables more complete sequence coverage by disrupting intramolecular electrostatic interactions that can hold fragments of large peptides and proteins together. These enhanced capabilities made possible by the ExD cell expand the size of peptides and proteins that can be analyzed as well as the analytical certainty of characterizing their post-translational modifications.

Indexed as

DisulfidesElectronsGlycosylationInsulinIsoaspartic AcidLeucineLysineMass SpectrometryPhosphopeptidesPhosphorylationProlineProtein Processing, Post-TranslationalProteinsSoftwareSubstance PDisulfidesInsulinIsoaspartic AcidLeucineLysinePhosphopeptidesProlineProteinsSubstance Pelectron capture dissociationelectron transfer dissociationisoaspartateproteoformproteomics

Identifiers

PMID33914527
PMCPMC8343505

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.