Evidence map›Paper›PMID 33911081›Full record

ArticleNature communications2021

Recurrent deletions in clonal hematopoiesis are driven by microhomology-mediated end joining.

Tzah Feldman, Akhiad Bercovich, Yoni Moskovitz, Noa Chapal-Ilani, Amanda Mitchell, Jessie J F Medeiros, Tamir Biezuner, Nathali Kaushansky, Mark D Minden, Vikas Gupta and 4 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. The Role of Mutated Calreticulin in the Pathogenesis ofInternational journal of molecular sciences · 2024
    Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Multifaceted Nature of DNA Polymerase θ.International journal of molecular sciences · 2023
    Review
  12. Polλ promotes microhomology-mediated end-joining.Nature structural & molecular biology · 2023
    Article
  13. Genes · 2022
    Article
  14. Article
  15. Review
  16. Review
  17. Review
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 2 countries.

Tzah FeldmanDepartment of Immunology, Weizmann Institute of Science, Rehovot, Israel.
Akhiad Bercovich *Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, Israel.
Yoni Moskovitz *Department of Immunology, Weizmann Institute of Science, Rehovot, Israel.
Noa Chapal-IlaniDepartment of Immunology, Weizmann Institute of Science, Rehovot, Israel.
Amanda MitchellPrincess Margaret Cancer Centre, University Health Network (UHN), Toronto, ON, Canada.
Jessie J F MedeirosPrincess Margaret Cancer Centre, University Health Network (UHN), Toronto, ON, Canada.ORCID 0000-0001-6597-4613
Tamir BiezunerDepartment of Immunology, Weizmann Institute of Science, Rehovot, Israel.ORCID 0000-0002-3642-0977
Nathali KaushanskyDepartment of Immunology, Weizmann Institute of Science, Rehovot, Israel.
Mark D MindenPrincess Margaret Cancer Centre, University Health Network (UHN), Toronto, ON, Canada.
Vikas GuptaPrincess Margaret Cancer Centre, University Health Network (UHN), Toronto, ON, Canada.
Michael MilyavskyDepartment of Pathology, Tel-Aviv University, Tel-Aviv, Israel.
Zvi LivnehDepartment of Biomolecular Sciences, Weizmann Institute of Science, Rehovot, Israel.
Amos TanayDepartment of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, Israel.ORCID 0000-0001-9419-3824
Liran I ShlushDepartment of Immunology, Weizmann Institute of Science, Rehovot, Israel. liranshlush3@gmail.com.ORCID 0000-0002-3700-270X
Weizmann Institute of Science · ILUniversity Health Network · CATel Aviv University · IL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The mutational mechanisms underlying recurrent deletions in clonal hematopoiesis are not entirely clear. In the current study we inspect the genomic regions around recurrent deletions in myeloid malignancies, and identify microhomology-based signatures in CALR, ASXL1 and SRSF2 loci. We demonstrate that these deletions are the result of double stand break repair by a PARP1 dependent microhomology-mediated end joining (MMEJ) pathway. Importantly, we provide evidence that these recurrent deletions originate in pre-leukemic stem cells. While DNA polymerase theta (POLQ) is considered a key component in MMEJ repair, we provide evidence that pre-leukemic MMEJ (preL-MMEJ) deletions can be generated in POLQ knockout cells. In contrast, aphidicolin (an inhibitor of replicative polymerases and replication) treatment resulted in a significant reduction in preL-MMEJ. Altogether, our data indicate an association between POLQ independent MMEJ and clonal hematopoiesis and elucidate mutational mechanisms involved in the very first steps of leukemia evolution.

Indexed as

AphidicolinCalreticulinClonal HematopoiesisDNA Breaks, Double-StrandedDNA-Directed DNA PolymeraseDNA End-Joining RepairDNA Polymerase thetaEnzyme InhibitorsHumansLeukemia, MyeloidMyeloid Progenitor CellsPoly (ADP-Ribose) Polymerase-1Repressor ProteinsSequence DeletionSerine-Arginine Splicing FactorsAphidicolinASXL1 protein, humanCalreticulinCALR protein, humanDNA-Directed DNA PolymeraseDNA Polymerase thetaEnzyme InhibitorsPARP1 protein, humanPoly (ADP-Ribose) Polymerase-1Repressor ProteinsSerine-Arginine Splicing FactorsSRSF2 protein, human

Identifiers

PMID33911081
PMCPMC8080710
OpenAlexW3158694679

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.