Evidence map›Paper›PMID 33911074›Full record

ArticleCell death & disease2021

Genome-wide CRISPR screens reveal synthetic lethal interaction between CREBBP and EP300 in diffuse large B-cell lymphoma.

Man Nie, Likun Du, Weicheng Ren, Julia Joung, Xiaofei Ye, Xi Shi, Sibel Ciftci, Dongbing Liu, Kui Wu, Feng Zhang and 1 more

Open access · goldAbstract read
In one paragraph

Article in Cell death & disease, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
4.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 33 citations in OpenAlex.

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  13. Science advances · 2023
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  18. Towards precision medicine in lymphoid malignancies.Journal of internal medicine · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 3 countries.

Man Nie *Department of Biosciences and Nutrition, Karolinska Institutet, Stockholm, Sweden.
Likun Du *Department of Biosciences and Nutrition, Karolinska Institutet, Stockholm, Sweden.
Weicheng RenDepartment of Biosciences and Nutrition, Karolinska Institutet, Stockholm, Sweden.
Julia JoungBroad Institute of MIT and Harvard, Cambridge, MA, USA.
Xiaofei YeDepartment of Biosciences and Nutrition, Karolinska Institutet, Stockholm, Sweden.
Xi ShiBroad Institute of MIT and Harvard, Cambridge, MA, USA.
Sibel CiftciDepartment of Biosciences and Nutrition, Karolinska Institutet, Stockholm, Sweden.
Dongbing LiuBGI-Shenzhen, Shenzhen, 518083, China.
Kui WuBGI-Shenzhen, Shenzhen, 518083, China.
Feng ZhangBroad Institute of MIT and Harvard, Cambridge, MA, USA. zhang@mit.edu.ORCID 0000-0002-7444-1103
Qiang Pan-HammarströmDepartment of Biosciences and Nutrition, Karolinska Institutet, Stockholm, Sweden. Qiang.Pan-Hammarstrom@ki.se.ORCID 0000-0003-1990-8804
Karolinska Institutet · SEBroad Institute · USBGI Group (China) · CNSun Yat-sen University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Diffuse large B-cell lymphoma (DLBCL) is the most common type of aggressive lymphoid malignancy and a highly heterogeneous disease. In this study, we performed whole-genome and transcriptome sequencing, and a genome-wide CRISPR-Cas9-knockout screen to study an activated B-cell-like DLBCL cell line (RC-K8). We identified a distinct pattern of genetic essentialities in RC-K8, including a dependency on CREBBP and MDM2. The dependency on CREBBP is associated with a balanced translocation involving EP300, which results in a truncated form of the protein that lacks the critical histone acetyltransferase (HAT) domain. The synthetic lethal interaction between CREBBP and EP300 genes, two frequently mutated epigenetic modulators in B-cell lymphoma, was further validated in the previously published CRISPR-Cas9 screens and inhibitor assays. Our study suggests that integration of the unbiased functional screen results with genomic and transcriptomic data can identify both common and unique druggable vulnerabilities in DLBCL and histone acetyltransferases inhibition could be a therapeutic option for CREBBP or EP300 mutated cases.

Indexed as

Cell Line, TumorClustered Regularly Interspaced Short Palindromic RepeatsCREB-Binding ProteinE1A-Associated p300 ProteinGene Knockdown TechniquesHumansLymphoma, Large B-Cell, DiffuseCREB-Binding ProteinCREBBP protein, humanE1A-Associated p300 ProteinEP300 protein, human

Identifiers

PMID33911074
PMCPMC8080727
OpenAlexW3157067419

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.