Evidence map›Paper›PMID 33909608›Full record

ArticlePLoS biology2021

Phe-Gly motifs drive fibrillization of TDP-43's prion-like domain condensates.

David Pantoja-Uceda, Cristiana Stuani, Douglas V Laurents, Ann E McDermott, Emanuele Buratti, Miguel Mompeán

Abstract read
In one paragraph

Article in PLoS biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Review
  2. Review
  3. TDP-43 Aggregation: The Healthy-Toxic Balance of the Prion-Like Domain.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
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  16. A synergy between site-specific and transient interactions drives the phase separation of a disordered, low-complexity domain.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

David Pantoja-UcedaRocasolano Institute of Physical Chemistry, Spanish National Research Council, Madrid, Spain.ORCID 0000-0003-4390-6972
Cristiana StuaniInternational Centre for Genetic Engineering and Biotechnology, Trieste, Italy.
Douglas V LaurentsRocasolano Institute of Physical Chemistry, Spanish National Research Council, Madrid, Spain.
Ann E McDermottDepartment of Chemistry, Columbia University, New York, New York, United States of America.ORCID 0000-0002-9249-1649
Emanuele BurattiInternational Centre for Genetic Engineering and Biotechnology, Trieste, Italy.
Miguel MompeánRocasolano Institute of Physical Chemistry, Spanish National Research Council, Madrid, Spain.ORCID 0000-0002-5608-3648

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Transactive response DNA-binding Protein of 43 kDa (TDP-43) assembles various aggregate forms, including biomolecular condensates or functional and pathological amyloids, with roles in disparate scenarios (e.g., muscle regeneration versus neurodegeneration). The link between condensates and fibrils remains unclear, just as the factors controlling conformational transitions within these aggregate species: Salt- or RNA-induced droplets may evolve into fibrils or remain in the droplet form, suggesting distinct end point species of different aggregation pathways. Using microscopy and NMR methods, we unexpectedly observed in vitro droplet formation in the absence of salts or RNAs and provided visual evidence for fibrillization at the droplet surface/solvent interface but not the droplet interior. Our NMR analyses unambiguously uncovered a distinct amyloid conformation in which Phe-Gly motifs are key elements of the reconstituted fibril form, suggesting a pivotal role for these residues in creating the fibril core. This contrasts the minor participation of Phe-Gly motifs in initiation of the droplet form. Our results point to an intrinsic (i.e., non-induced) aggregation pathway that may exist over a broad range of conditions and illustrate structural features that distinguishes between aggregate forms.

Indexed as

Protein AggregatesAmino Acid SequenceAmyloidChemical PrecipitationDipeptidesDNA-Binding ProteinsHumansHydrogen-Ion ConcentrationProtein Aggregation, PathologicalProtein Interaction Domains and MotifsSolventsAmyloidDipeptidesDNA-Binding ProteinsphenylalanylglycineProtein AggregatesSolventsTARDBP protein, human

Identifiers

PMID33909608
PMCPMC8109789

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.