Evidence map›Paper›PMID 33906962›Full record

ArticleGenome research2021

Third-generation sequencing revises the molecular karyotype for

Jing Xia, Aarthi Venkat, Rachel E Bainbridge, Michael L Reese, Karine G Le Roch, Ferhat Ay, Jon P Boyle

Abstract read
In one paragraph

Article in Genome research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Frontiers in immunology · 2025
    Article
  6. Article
  7. Article
  8. Susceptibility ofmBio · 2024
    Article
  9. Review
  10. Article
  11. Article
  12. Variation in CD8 T cell IFNγ differentiation to strains ofFrontiers in cellular and infection microbiology · 2023
    Article
  13. Article
  14. Article
  15. Article
  16. Life Cycle and Transmission ofMicroorganisms · 2022
    Review
  17. Article
  18. Unifying Virulence Evaluation inFrontiers in cellular and infection microbiology · 2022
    Review
  19. Frontiers in cellular and infection microbiology · 2022
    Review
  20. Identification of Oocyst-DrivenMicroorganisms · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Jing XiaDepartment of Biological Sciences, Dietrich School of Arts and Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, USA.
Aarthi VenkatComputational Biology and Bioinformatics, Yale University, New Haven, Connecticut 06520, USA.
Rachel E BainbridgeDepartment of Biological Sciences, Dietrich School of Arts and Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, USA.
Michael L ReeseUniversity of Texas-Southwestern, Dallas, Texas 75390, USA.ORCID 0000-0001-9401-9594
Karine G Le RochDepartment of Molecular, Cell and Systems Biology, College of Agricultural and Life Sciences, University of California-Riverside, Riverside, California 92521, USA.
Ferhat AyLa Jolla Institute for Immunology, La Jolla, California 92037, USA.ORCID 0000-0002-0708-6914
Jon P BoyleDepartment of Biological Sciences, Dietrich School of Arts and Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, USA.ORCID 0000-0003-0000-9243

Funding

Comparative and functional genomics of Toxoplasma and Hammondia hammondiR01AI116855 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI BOYLE, JON P · 2015 to 2024
$3.2M
Effector diversification and Toxoplasma virulenceR01AI114655 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI BOYLE, JON P · 2015 to 2019
$1.9M
Evolution of the 3D chromatin structure in apicomplexan parasitesR21AI142506 · NIAID · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI LE ROCH, KARINE GAELLE · 2019 to 2020
$479k
Finishing multiple genomes in EupathDB using Oxford Nanopore Single Molecule sequencingR21AI154386 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI BOYLE, JON P · 2020 to 2021
$457k
NIAID NIH HHS R01 AI114655NIAID NIH HHS R01 AI116855NIAID NIH HHS R21 AI142506NIAID NIH HHS R21 AI154386
6 · The paper itself

Abstract

PubMed holds no abstract for this paper.

Indexed as

ToxoplasmaDNA Copy Number VariationsGenomeKaryotypeSequence Analysis, DNA

Identifiers

PMID33906962
PMCPMC8092015

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.