Evidence map›Paper›PMID 33906264›Full record

ArticleMedical physics2021

Automated delineation of orbital abscess depicted on CT scan using deep learning.

Roxana Fu, Joseph K Leader, Tejus Pradeep, Junli Shi, Xin Meng, Yanchun Zhang, Jiantao Pu

Abstract read
In one paragraph

Article in Medical physics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

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8citing papers in PubMed
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1 · What the graph read from it

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3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

7 authors.

Roxana FuDepartment of Ophthalmology, University of Pittsburgh, Pittsburgh, PA, 15213, USA.
Joseph K LeaderDepartments of Radiology and Bioengineering, University of Pittsburgh, Pittsburgh, PA, 15213, USA.
Tejus PradeepSchool of Medicine, Johns Hopkins University, Baltimore, MD, USA.
Junli ShiDepartments of Radiology and Bioengineering, University of Pittsburgh, Pittsburgh, PA, 15213, USA.
Xin MengDepartments of Radiology and Bioengineering, University of Pittsburgh, Pittsburgh, PA, 15213, USA.
Yanchun ZhangDepartments of Radiology and Bioengineering, University of Pittsburgh, Pittsburgh, PA, 15213, USA.
Jiantao PuDepartments of Radiology and Bioengineering, University of Pittsburgh, Pittsburgh, PA, 15213, USA.

Funding

Macro-vasculature: A Novel Image Biomarker of Lung CancerR01CA237277 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI PU, JIANTAO · 2020 to 2024
$2.8M
CT Assessment of Lung Fissures: Anatomy and Correlated FunctionR01HL096613 · NHLBI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI PU, JIANTAO · 2010 to 2019
$1.9M
Center for Strategic Scientific Initiatives, National Cancer Institute (CSSI, NCI) R01CA237277HHS | NIH | National Heart, Lung, and Blood Institute (NHLBI) R01HL096613NCI NIH HHS R01 CA237277
6 · The paper itself

Abstract

objectivesTo develop and validate a deep learning algorithm to automatically detect and segment an orbital abscess depicted on computed tomography (CT).

methodsWe retrospectively collected orbital CT scans acquired on 67 pediatric subjects with a confirmed orbital abscess in the setting of infectious orbital cellulitis. A context-aware convolutional neural network (CA-CNN) was developed and trained to automatically segment orbital abscess. To reduce the requirement for a large dataset, transfer learning was used by leveraging a pre-trained model for CT-based lung segmentation. An ophthalmologist manually delineated orbital abscesses depicted on the CT images. The classical U-Net and the CA-CNN models with and without transfer learning were trained and tested on the collected dataset using the 10-fold cross-validation method. Dice coefficient, Jaccard index, and Hausdorff distance were used as performance metrics to assess the agreement between the computerized and manual segmentations.

resultsThe context-aware U-Net with transfer learning achieved an average Dice coefficient and Jaccard index of 0.78 ± 0.12 and 0.65 ± 0.13, which were consistently higher than the classical U-Net or the context-aware U-Net without transfer learning (P < 0.01). The average differences of the abscess between the computerized results and the experts in terms of volume and Hausdorff distance were 0.10 ± 0.11 mL and 1.94 ± 1.21 mm, respectively. The context-aware U-Net detected all orbital abscess without false positives.

conclusionsThe deep learning solution demonstrated promising performance in detecting and segmenting orbital abscesses on CT images in strong agreement with a human observer.

Indexed as

Deep LearningOrbital CellulitisAbscessChildHumansRetrospective StudiesTomography, X-Ray Computedcomputed tomographydeep learningorbital cellulitissegmentation

Identifiers

PMID33906264
PMCPMC8600964

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