Evidence map›Paper›PMID 33905099›Full record

ArticleScience China. Life sciences2021

Genome sequencing of the bacterial blight pathogen DY89031 reveals its diverse virulence and origins of Xanthomonas oryzae pv. oryzae strains.

Fudan Chen, Bingxiao Yan, Xiangyu Gong, Helin Li, Zuhua He

Abstract read
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In one paragraph

Article in Science China. Life sciences, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.5field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
  3. Bactericidal bissulfone BScience China. Life sciences · 2024
    Article
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  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 5 institutions in 1 country.

Fudan ChenCollege of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, China.
Bingxiao YanUniversity of Chinese Academy of Sciences, Beijing, 100049, China.
Xiangyu GongUniversity of Chinese Academy of Sciences, Beijing, 100049, China.
Helin LiSchool of Life Sciences, Henan University, Kaifeng, 475004, China.
Zuhua HeCollege of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, China. zhhe@cemps.ac.cn.
Center for Excellence in Molecular Plant Sciences · CNChinese Academy of Sciences · CNHenan University · CNUniversity of Chinese Academy of Sciences · CNZhejiang University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The bacterial pathogen Xanthomonas oryzae pv. oryzae (Xoo), belonging to Xanthomonas sp., causes one of the most destructive vascular diseases in rice worldwide, particularly in Asia and Africa. To better understand Xoo pathogenesis, we performed genome sequencing of the Korea race 1 strain DY89031 (J18) and analyzed the phylogenetic tree of 63 Xoo strains. We found that the rich diversity of evolutionary features is likely associated with the rice cultivation regions. Further, virulence effector proteins secreted by the type III secretion system (T3SS) of Xoo showed pathogenesis divergence. The genome of DY89031 shows a remarkable difference from that of the widely prevailed Philippines race 6 strain PXO99A, which is avirulent to rice Xa21, a well-known disease resistance (R) gene that can be broken down by DY89031. Interestingly, plant inoculation experiments with the PXO99A transformants expressing the DY89031 genes enabled us to identify additional TAL (transcription activator-like) and non-TAL effectors that may support DY89031-specific virulence. Characterization of DY89031 genome and identification of new effectors will facilitate the investigation of the rice-Xoo interaction and new mechanisms involved.

Indexed as

Genome, BacterialCrops, AgriculturalOryzaPhylogenyPlant DiseasesReal-Time Polymerase Chain ReactionVirulenceWhole Genome SequencingXanthomonasDY89031genome sequencingnon-TAL effectorsTAL effectorsXanthomonas oryzae pv. Oryzae

Identifiers

PMID33905099
OpenAlexW3159272909

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.